G244287


Basic Information

Item Value
gene id G244287
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 413912 ~ 415609 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU277275
TGGAGATTTGGGAGTATAAATAGAGGAGCTGCAGCCAGTGCAAATCAGACTCGCTCTGCACAGAGAGATCTACAGCACAGAGATCCAGACATGACACCTCCAATCATCTCAAAGGAGCATCTCCCTCTCAACAACAAGCTGAGAAAGCCAATAGTGGAGAAGATGAAGGTCTAAACAGCAGCATTGAGCAGCTCAAGTGTCTTCTGGCTCCAGAGTTCGTCAAGCAGCAGCAGCCTGATTCCAAGCTGGAGAAAGCAGATATCCTGGAGATGATGACGCTCAACTTCCAGTTCACATGCTGTCAATCAAGAGAAAGCAGATATCCTGGAGATGATGACGCTCTTCCTGTCCAAAGATGAGATGAGACTGCTGAAGCACTTCCAGAAGCTGCAGACATCATGTGATCAGAACAGGAGGGAAAGTGTCCTGCCTCGGCTGAGCCGCCCAGACCAGAACACCTTCAGCAAAGAGATGAAGGTCAACAAGAGCGCCATCTGGAGGCCTTGAGCCTTACAGCAACCAGCAGCACATACTGAACATCTACACTAGATGACTGTCATTTAAGCTTCTCTTTTTGAAAAAAAAAAAAAAAAAAAATGTGTGTATAAAATTCCTTTTTGGATAAAATTGTATTTATAAAGTACGTTATGATACAGTGAAGACTTTGCTTCACTTTACTTTGCATTAGATGTAATGCTCCTGGATGTATAATATGCAAGACACTTATTCAGCTTTTTGAATGCTTCTAACTTTGTGTGTTTTAACATGAATAAGTTTAAAATCATTTCTGTTTATAGAAAGAATTAAATTTCCCTTCTATTTTCATGGGTTCTATTAGGCTACTTATTTCAAGTAATCTCAATTTGTGCTTCACATTGAAGCTAGATTTAATTTTAACCTCATAATGAGTCATTTGAGTAAATTGTTATTTCTCATTTTTTGAGCATGTTTGGACAAATCTTGTCAATTTATGTTGTAAACAGTTCCTTTTTGGAACAAGTTTGCTTAATGAACACATTCCTTTCATAAAGGCATGTATTGTTGTGATGAAAGCTTTGTGAAGTTTTCAACTACTGACTTGTATTGTATCAATATACGTGTGTATTTGAGTGTGTGCAAAACATCTGCTTTCTCATTGATCTAATAAATCAAATTGCTCTTCAATCATTTTTTGCTTTTCACTGGTATATAAGCACAAACATTTTAAATGCAAGGAATGTTTAATAAGTGATCAGTTACAACATGATTTGATTAAATAACAAAAACACACCTTTACAAAAGGCACTGATTGAGACTAAAACTCAAATTACAGGATTTTCTCATTACGTTATGCTTGTCGTACACTGTAGACAATTCTCAAACTAGATTAAATCCAAAAGAGCATGCAAATGTTGCATTAAAAAGCAACAAATCTTACAAATAAGTGAATACGCCAAAACAAACGTTTTGTCAAAGCAGACATTCACTGATAAAGCTCTAAATTATTTGTTCTTCCACGGTCTCCATAATGGCACTCTTGACGATGATCGTTTTGCTGATCTGTGCACCAATCCACGCTGCGTGGAGGCCATTAAGTGCATCTGATTGGTCCTTTGCAGCACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU277275 True 1602 lncRNA 0.38 2 413912 415609

Neighbor

gene id symbol gene type direction distance location
CI01000057_00409300_00412579 NA coding downstream 1287 409168 ~ 412625 (-)
CI01000057_00400397_00400972 NA coding downstream 12898 400057 ~ 401014 (-)
CI01000057_00381820_00385585 NA coding downstream 28327 381333 ~ 385585 (-)
CI01000057_00339874_00343207 MRTO4 coding downstream 70399 339811 ~ 343695 (-)
CI01000057_00314025_00331813 NA coding downstream 82099 313546 ~ 331813 (-)
CI01000057_00420698_00421063 NA coding upstream 4377 419986 ~ 421063 (-)
CI01000057_00459703_00467870 ABHD6A, ABHD6 coding upstream 43334 458943 ~ 467870 (-)
CI01000057_00475661_00476027 NA coding upstream 59783 475392 ~ 476027 (-)
CI01000057_00534471_00559759 NA coding upstream 117979 533588 ~ 559759 (-)
CI01000057_00561471_00562830 NA coding upstream 145620 561229 ~ 562857 (-)
G244305 NA non-coding downstream 6083 407220 ~ 407829 (-)
G244304 NA non-coding downstream 7939 405583 ~ 405973 (-)
G244264 NA non-coding downstream 104855 308786 ~ 309057 (-)
G244180 NA non-coding downstream 240154 171156 ~ 173758 (-)
G244338 NA non-coding upstream 64334 479943 ~ 480154 (-)
G244339 NA non-coding upstream 64588 480197 ~ 480417 (-)
G244359 NA non-coding upstream 158927 574536 ~ 574885 (-)
G244360 NA non-coding upstream 160258 575867 ~ 576145 (-)
G244358 NA other upstream 154921 570530 ~ 571028 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other upstream 1385975 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA other upstream 1504447 1904533 ~ 1921905 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 3476126 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 4513135 4927533 ~ 4931420 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G94104 NA non-coding CM030131.1 CM030131.1 28651148 ~ 28652294 (+)
tiger barb (Puntius tetrazona) LOC122353716 NA non-coding NC_056709.1 CM032078.1 5162029 ~ 5164464 (-)