AMCG00002167


Basic Information

Item Value
gene id AMCG00002167
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5975725 ~ 6015393 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002167
ATGGCAGGCACTCTCGGCTCTTGGCATGTTCTCACCTCCCCGACATGCGCGCGCACGGCCCCCGGTGTGGCGGGCCAGTcagccctgtctgtctgtggtggTGCCAGCTCATCAGCCAGGAATGTGACGGAGTGGATTCGTGAGGCGAAGGGTGGCTTTAGACCCTGGAGCAGAACTGCAGATTTATCAAAGGGATTCGGGCTGCGATCCAAATGGCCCAGCCCTGGAATGAGAGCCATGGGGTACAAATCCGACACCATGGCCAATATTGGCCAGTTAATGCTGGAGGCGTTACTCGATGAGACAGAGCATCTCCATTTGCTTTCAAACGTCGACGAGTGCCAAGTTCACAATGGAGGCTGCCAGCACAGATGTGTGAACACTCGGGGCTCCTACTACTGCGAGTGCAACCCGGGGTCACGCCTGCACACCGACGCACGGACCTGTATTGCCGTCCACTCCTGTGCCATCAGCAATGGGGGCTGCGAGCAGGAGTGTGTTCAGCTCTCCCTGGCCCACTACCAGTGCCGATGCCGCCAAAACTACCAGCTCATGGAGGATGGCAAGCACTGCAAATTGCGGAGCCCCTGTGCAGAGAGGAACGGAGGCTGCATGCACACGTGCCGGAGCGATGGGGAGCGGCCTCGCTGTGAATGCCACCCAGGGTACACACTGGCACAGGACAGCCAGAGCTGTGAAGACATCGATGAGTGCGAGACTGGCCAGGCGGCGTGTTCTCACGGCTGCCACAACAGGCGCGGCTCCTTCACCTGCATCTGCAACCCCGGGTATGAGCTGGGCGCTGACGGCAAACAGTGTTACAGAATCGAGATGGAAATCGTCAACAGCTGTGAGACTGACAACGGAGGCTGTTCCCACCACTGCCAGCACTCCACCAACGGACCCGTATGCAGCTGTAATTATGGCTACCAGCTGGACGACGACCTCAAGACGTGTGTGGTCCTGCCGGTGTGTTCCTGTGAGCTCAACCCAGACGAATGTTTGCCCGGCAAAGCGCTGAtctctgtgtgttgtgcagATACGGACGAGTGCAAGGAGGGCGACTCGTGCTGCGAGCAGGACTGTACCAACTACCCTGGGGGCTACGAGTGCTACTGCGGGGCAGGGTACCACCTGAACAGTGACGGCTGCGGCTGCGACGatgTGGACGAGTGCTCCTCCAGGAATGGGGGCTGTGAGCACACCTGCCACAACACTGCTGGCTCGTTCTTGTGCTACTGCCCCATCGCCTACCGGCTGGACGAAGACCGCAGGAGCTGCATCCCCCTGGAAGGCGCGGTGAAAGTCCTGAATGGGCCGCAGGCGGCAGAGAGACCAGTGCCCCAGGTCACGCTGCTCCATGAGTACGCCCAGCTCCTGCAGGACTACCAGGACTACGAGGAGGGCATGGGTGAGCTGCGAGCCGAGAGCACCCTGTCAGAGAAGTTCGTGTGCTTGAACTACACGTTTGGCCATGACTGCAGCTTGACCTGCGATGACTGCTCTAACGGGGGCCTGTGCACACCCGAGGGAGATGGCTGTGACTGCCCTGATGGCTGGACAGGGGTCATCTGCAACCAGACTTGTCCAGAGGGCACCTTCGGCAGGAACTGTTCATTTGACTGTAAATGTAAGAACGGTGCCACCTGCGACCCAGTCAGTGGGCACTGCCGCTGCCCGCCTGGTGTCAGCGGAGATGTGTGCCAGGATGGCTGCCCCAAAGGTTTCTACGGCAAGTTCTGCAACAAGAAGTGTAACTGTGCCAACCACGGGCGCTGCCACCGCACGTACGGCGCCTGTCTCTGTGACGCTGGCCTGTACGGCAGGTTTTGTCACCTCCccTGTCCGAAGTGGGCGTACGGTCCGGGCTGTTCCGAGGAGTGTAAGTGTGTTCAACAAAACACCCTGGAGTGTCACCGGAGCCATGGCACCTGCGTCTGCAAGCCCGGCTATCACGGCGACGCCTGTCAGGAAGAATGTGGCGTTGGCTTCTTTGGCTCCAAATGCAAGCGGAAGTGCGAGTGTGCAGCCGGGGTGCCATGTGATCACGTGACTGGGGAGTGTAAGAGACGCTGTCCAGCAGGGCTTCAAGGCGAGAGTTGCCAACAAGAATGCCCCGAGGGGAGCTTCGGTGTGGACTGCGCCCAGACCTGCGACTGTGCCAGTGCACCATGTGACACAGTGACGGGGAGGTGCCAGTGCTCTGCTGGGAGGACCGGGGAGCGCTGTGAGCAAGACTGTCCAGAGGGGCGCTGGGGAGTGGGGTGTCTGGAGGCCTGTCCAGTCTGTGAGAACGGAGGAACCTGTGACAAAGGAAATGGCACCTGCATCTGCCCACCAGGGTACATGGGCAAGCTGTGCCAAAATGTATGCCCTGTGGGCCGGTTTGGCCTGGGATGCCAGCTGCGGTGTGTCTGTGAGAACAGCGGGCACTGCCACCCTGTCACCGGGCGCTGTACCTGTGTCGCAGGCTGGACTGGGCACAACTGCAGGAGAGCCTGCGACTCCGGGCGCTGGGGGCCGGACTGTGCCAACTCCTGCCACTGTAGCAACAGTGACGGCAGCTGCGACGCGGTGACGGGACAGTGCGTCTGCGAGGCTGGCTTCGGCGGGGCGCGCTGTGAGCACAAATGCTCAGCAGGCACTTTCGGACTTGGGTGTCGCCACCAGTGCCAGTGTGACAACAGGGCCGCGTGTGACCATGTGAGTGGGGCCTGCACCTGCCTGGCTGGGTGGACAGGGACCTTCTGTGAGAGACCCTGTCCAGAAGGGTTCCATGGCGTGGAGTGCCGGGAGAAGTGCAGCTGTTTAAACGGGGGCCGCTGTGACCACCTCAGCGGCCGGTGTCTCTGTCCCGCTGGCTGGATCGGCCCGCACTGCAACCTCTCTTGCCCGCCTGGATTCCACGGCGAGGGCTGCAACCACACCTGCGACTGCCGAAACGGTGCCAGCTGTGACCCAGTGAGCGGGCAGTGTCGCTGCGCACCAGGCTGGACTGGGCACAACTGCCAACAAGGTAACTGCATGGTCTTGGAGGGCAGGGCCATGCTGCACAGTGAGAGCTTGGCTTGCACTCAGTGGACTGAACGAGTTGAGTCAATCTCCCTGCTGAACCAGCTGCCCTCGCATGCTCGGCTGGCTTCTACGGAGCTGACTGCCGACAGCGCTGTCTGTGTCAAAATGGAGGGTCATGTGACCGCGTTACTGGACGCTGCACGTGCCAAGATGGGTGGACTGGGCTGGCCTGCGAACTGGGTACAGTGCTCTTCGGGCCGCTTCGGAGCCGACTGCCAgcgcagctgtgtgtgtgagaatgggGGGCGGTGCGAGCGCCAGAGCGGCAAGTGCTCCTGTCCGGCGGGCTGGGTCGGGGACCGGTGTCAGACAGGTTGTGCAGCCGGGCTGTTTGGCATGGGCTGTGAGGAGCAGTGCAACTGTGAGCACAGCGCCCCTTGTCACCACGTCACCGGCGCCTGCCTGTGCCCCGCCGGCTGGAGAGGCCCGCGCTGCGAAAGAGCCTGTTTGCCCGGGTCCTATGGACAGAGCTGTGCGCGGCGCTGCTCCTGTCCTCACGGCACTTCCTGTAACCACGTGACCGGCGAGTGTGGCTGTCCGCCGGGCATGACTGGGAACGGCTGTGAGCAGCCTTGCCTGCCCGGGACATATGGCCAGAACTGCAACCAGGTGTGCCAGTGCTCCGGAGTGAACCAGCTGTGCGACCCCGTCACCGGCACGTGCTACTGTGCACCAGGCTACCACGGCAAGGAATGCCTGCTCGAATGCCCGGATGGCTGGTACGGTCCGAACTGTGTGCGGGAGTGCCAGTGCCTGAATGGAGGGGCGTGCCACCTCGCTACCGGCACCTGTGAATGCCCGCCTGGGTTCATTGGGGCTGACTGCAACACCACATGCCCAGACAGTCGCTATGGTCAGGACTGTGCCCAGGTGTCCTTCTGCGGCGAGGGGGCCAGGTGTGATCACGTGTCGGGCCGGTGTGAGTGCTCAGCCGGGCGACGGGGACAGTACTGTGAACGAGGCTGTGATCCGGGCCGCTTCGGGGAGGGCTGTGTGCGGGCCTGTGACTGCAGGAACGGGGGGCTGTGTGACGCTGTCTCCGGGGTCTGCTCCTGTACGCTGGGCTGGACCGGGCCGCACTGTGACACAGAGTGTCCCCCCAACACGTACGGTGCCAAATGTCAGCTGGCATGCCTGTGTCAGAACAACGGCACCTGTGACAGAGTGACGGGCAGCTGCCAGTGCGCCCCGGGTTACTACGGGCACCTCTGTGAACACGCCTGCCCCACTGGCTTCCATGGCACCGGTTGCCAGCAGAGCTGTAACTGCACTCATGGGGCGTCCTGTGACCCTGCGACCGGCCGGTGTCTGTGTCCTGCTGGTTTGCACGGGGAGTTCTGTGAGAAAGTGTGCGAGTGGGGCCGGTTTGGGGAGGGCTGTCAGGAGTCATGTGACTGCGAAGGGGACACACCTTGTGATCCAGTGAGTGGAAGGTGTCTGTGCCCTCCGGGGAAGACCGGAGCCAAGTGTGACATAGACTGCCGAGCGAACCGCTTCGGGCCGGACTGCACCGAGACCTGCGAGTGTGGGAACAACGGGCAGTGTGACCCTCGCAATGGCCACTGCACCTGTCTGTTTGGGTGGATAGGGCTCACCTGCCAAGAAGGTAAGAAACAAGACAACAAAGTTATCTCTGCTCTGGACAGAAGGGCCGCCCCATCACtcctccaggagagagagacagagcccTTCGCATCTGAACACATCTGTATAACGCCCCCGGCCGCCTCGCTGCTACCGGCACCTCGCCCCCTGACCCCCTCCACGGGCCGTGCCAACAAGAGCGATGGCCTTGTCAACAATCAACCCCGCAACGAGGGCACATCCATCACAGCCCATGCAAAACACTGA
>TU152051
GGATTGTAGGGCTTTGTTTGTGCCGGCTTGTTTGGAAATATTATTGTGCTGTAAAGCAATTTATGCAttgtaaaaatattacaattcatTAATCTGTATTACCTATGGAATCTGTCTCTCACGCTGTTTTAATCTGCACCCCATtgtctgtgtctccctgtcAGTGTGCGAGTGGGGCCGGTTTGGGGAGGGCTGTCAGGAGTCATGTGACTGCGAAGGGGACACACCTTGTGATCCAGTGAGTGGAAGGTGTCTGTGCCCTCCGGGGAAGACCGGAGCCAAGTGTGACATAGACTGCCGAGCGAACCGCTTCGGGCCGGACTGCACCGAGACCTGCGAGTGTGGGAACAACGGGCAGTGTGACCCTCGCAATGGCCACTGCACCTGTCTGTTTGGGTGGATAGGGCTCACCTGCCAAGAAGgagagagagacagagcccTTCGCATCTGAACACATCTGTATAACGCCCCCGGCCGCCTCGCTGCTACCGGCACCTCGCCCCCTGACCCCCTCCACGGGCCGTGCCAACAAGAGCGATGGCCTTGTCAACAATCAACCCCGCAACGAGGGCACATCCATCACAGCCCATGCAAAACACTGAGATCTGACCGCGGCATGTGATGGCAATCATGAAACTGGACTATGGAAGTAGAGAGGTCTTCCAGAGTTTGCATGGAAACATGGCACTCTTTGAGGAGGAGGCTCTTTCAGCACTGAGATGATCTTGGTGGATTGTTGTACCTTCTTTCAAGGAGAGTTTTGGGCCAACGAACACCTAAAGGAGCAGGCCTCACCCCGCTGGGCTGCTGATACAGTGGAGGCGACAGTTCAAGTAGGGGTTCAGATGCCTGCATTGAGGACCTCTGTGCCTTCGCCTTGGCTCTCTGTTCTCCCATCAACCAAGCTTTTCAGGGGACCCAGGACCTCAGCAGTCTGTTGGACAAGCGGCTCTTCCTGAACCGTGGACAATTGTGGACATCGCAGTGCTGCCTTCTGTACCGTTTACTGTAATTAAAAGGAGAAtaactattttaatgtttgtttattaaaccaGCAGTTAATCGTGGGGCAGACTTACATAAGAAGAGAATTCAATTGGCAATAGAGGCGATGTCTAAAGCCCGGCCATCAGCGCCAGAACACCAGCCGTGCTCCGAGTGTTTGGAAGTACTTCTGAGATTAGATTTTTTCCTCACCGGGGCATCTTACCTCAGACACTCATGACCTCATCCGGcctatatctgtgtgtgtgtttgtgtggcatGTGTATATAGAGACCCATGCGCTCTGCACTCTCTCACtgttttcctcttcctctccatcTTTATAGAGAACTGTAGAGAATAGCAGATCGGATTTTGAAATGCTAAAAGGAAAATTCCTCTGGGTCAAGCATACTTAAGAGGCAGGGATATGGGTTGTTAGAGTCACAGTCTGGATATGCAAGACAGCTCGACATTCATTGCAGTGTCATCGATCTCGGACTCCGCAGTGAGGTCCTTTTGGCAGATGCAGGAAGGAAAGaggtttgaaaatgttattgacCAGCAATATCTCTATTTGAATCCGGGCGATGGATACTGTCCGTGTGTGCGTCACCCCTCTCATTTCGGTGCACCTTTTCCTCTGACACCAGGGAGTCAAGGTCAGTTCCAAATGGcctttatttgattattttgaatgattaTCTACATTATGTGATGTACAGGTGGTTGACAACGATTTTACAATGTAGCTCTTCAGGACAGCTGAAGTATggcatagtgtgtgtgtgtgtatttatgtatgtatgtttgttgaTACGCAAAGGAAATTATATTAAGCTTCACTTTCAAACGAGTCCAGTTTAAAAGCAATACAAGAGTCAATAGGAAAAGGTCCGTTTCCTTTTGTCTGAAGAAATGGCAACATAATCTCATCAAAAGACATAGTTGGTGTTGGTTGAAAATATGTCACTGGTTCTATGTTGATCTAGTTTTGGATTGGAAATGTTTCGCTGGATCTATCCATGACAGGGTAGGAGAATGGATATGCATACTTCCGTGCcctcagttttttcttttctcctttgcCTGCACTGCATTAAACCATATAAGCCATGAGCTATGAAGTTCACACACCCTTCATCTGaagtaatgttattatttgattaatttagattaatatatattgatgattaaactatacttattctATTGCCTACAGTAGACTGTAAAGCTTCCAGTTCATTGAATAGAGTTAAGACGTGCTGTGTGTAAAATTGTGACTGACAATCCATTGATTTCTGTTTCCTTGTCTTAATTCCATTCAATCAACTGGCatcttttgtgtttctctggtCTTGGCTGAATCAGAGGTCAGCAATACTCTAGAAATGGGACCATGGATTAATTATCaatattcattcaattaatcACAGAATATTATACTTTTGAAAGAAGAATGCAGATAATTTCCTCAGCGAACTGTATTTGATTTGTGAGTGGATCTGTAGGACCTCTGTGACCCACCTGTCCGTTTTGCCTTtttcacactgtactgtaatgtctTTACCACAAAGACGGCTCAAATGAATTGGACAGATCTCACTCCCTATATCAGATGCTGTCGATATTAAACTCTTCACCTGTACTGCTTGGTACGCTGCCATGAAAATTTCAGATGCTTGATGTGTTGATATATGAAGTGACTGTTCATTTTATGAAAGCTGGTGCTAAGACATTTGTTACTGTAGTTTGTAATTGTACATTTAGTGCAGTGTGAATCACCAGCCATGGTTAAGtgtaaaagtgttttatatttcttaatattgTATGTTATAATATTTCTTACAAAGCAcaatattatatgtatgtaataatgTATCTATTGCGTATTCCAATGCAGTGCAAtgcatattaataatgaacCATTTAGAAACATGTAGCCAGGACAGTCATTTTGCAGATGAAGTCAAATAAGTTGACGTCGCATTTCTGAAAAGCAGGAACTTCCTGTTTCACAGTCGAAATGTGGGAAACTAACCAGAAGCATAGCATAGTGAAAGTGCAGGGTATCTGGCTGAGAAACTGGTTACCTAAAGCTATTTAGACAAAACCTGACTATACCAATCAATATGGTGccttattgtaaaataaaagacTAACGAGCAACAGAAGTGTCAAAACAATACGACGTAGACCTGCTCAGCCCAGACTGTAAGATGACGACAGACTTTATTTAACCTTTCAGCCTTCATTGTGGAAACCATTCCACCACTACCATTATATCCTTATTTTGTATAACAATACAATGTGTTATAATCTGAATATATTGGACAGTACAATAGGAACTGCAAGGTTTCAAGATTTCACC

Function

GO: NA

KEGG:

id description
K24333 MEGF6; multiple epidermal growth factor-like domains protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002167 True 4926 mRNA 0.62 37 5978478 6015393
TU152051 False 3355 lncRNA 0.43 3 5975725 5979623

Neighbor

gene id symbol gene type direction distance location
AMCG00002164 LOC107385009 coding downstream 72652 5888490 ~ 5903073 (-)
AMCG00002166 NA coding downstream 92014 5874782 ~ 5883711 (-)
AMCG00002157 LOC106565901,LOC108438575,LOC104956748,LOC102783840,LOC107751159 coding downstream 148200 5804842 ~ 5827525 (-)
AMCG00002158 NA coding downstream 189693 5760834 ~ 5786032 (-)
AMCG00002155 igsf21,LOC108438574 coding downstream 688943 5264007 ~ 5286782 (-)
AMCG00002173 megf6 coding upstream 18451 6033844 ~ 6085952 (-)
AMCG00002172 mrto4,LOC106582960 coding upstream 90797 6106190 ~ 6108484 (-)
AMCG00002177 NA coding upstream 231873 6247266 ~ 6247869 (-)
AMCG00002178 NA coding upstream 242654 6258047 ~ 6262305 (-)
AMCG00002185 rnf207b,LOC108434591,LOC107593377,LOC107712689,LOC106572244 coding upstream 342264 6357657 ~ 6381431 (-)
G121288 NA non-coding downstream 37892 5933658 ~ 5937833 (-)
G121274 NA non-coding downstream 101589 5871668 ~ 5874136 (-)
G121271 NA non-coding downstream 114083 5858001 ~ 5861642 (-)
G121188 NA non-coding downstream 747594 5227674 ~ 5228131 (-)
G121152 NA non-coding downstream 838719 5128038 ~ 5137006 (-)
G121384 NA non-coding upstream 195192 6210585 ~ 6213660 (-)
G121403 NA non-coding upstream 262075 6277468 ~ 6277902 (-)
G121443 rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460 non-coding upstream 367040 6382433 ~ 6385919 (-)
G121444 NA non-coding upstream 392312 6407705 ~ 6407915 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding upstream 397620 6413013 ~ 6413274 (-)
G120993 NA other downstream 1755848 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 2189181 3784236 ~ 3786544 (-)
G120907 NA other downstream 2259473 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 2509264 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 2789372 3173505 ~ 3186353 (-)
AMCG00002223 NA other upstream 1811248 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 3593357 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 3742032 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 3815126 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 3821525 9836918 ~ 9853075 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022317 megf6a coding NC_007134.7 CM002907.2 21119592 ~ 21215520 (-)