G121384


Basic Information

Item Value
gene id G121384
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6210585 ~ 6213660 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU152141
ACCCCTTGAACatacttttattcttttttttttcttttccagataCCATTACAACCGTCATTTTGATACAACGGCCATTCCCAAAACGAAGTGCaattgtttgttggttttttgttttcattttatttaattttttaaaaaaggaagctcatatatatatttatagatatatattcatAGACTGTATACAACAaggatcaaaaataaaataagaattgtTAAACTATATACAACAATACAGTAAActgatttttgatttgtttaaacagCAGTTTCATTTGGAACTGTATGAACGAAGATGCAGGGGGAGAAGGAACAGTAAGGCAGCTGGGAGAAGCTATCGAATGAAAGAACAGGGCGGTGTCCACAAAACCGCATGAGCCTTCCCCTACACCCTTACCAGCATGCTAACACCATAAGAAAGTCAGTAAAAGACCAGCAGAGACCTTAGATTCTTTGATAACTGGTACAGCTCTGGTTCTCACAACTCTCGCTCCAATGCAACCAGAGGACCTACATAAGGCACTGGGTCCGAGAGGGTGCTAGAAACCTGAACTGTGAGGGTTATCGTGAAGCCGTTGGGGTGGCCTACATCAGGATACAAGGAAAAGCAATTCAAAAGAGATGCAGGAGTCGATCGATGGATTTGAAAGAACCCGAGTTGGACAGAGAAACTTCCACTTGTCCGCTCCCCGCACCCTATGTTGTCTTCATGCCAAAGCGTTAACCCCCTCACTCCTTCCCTTCTCCCTCATCCACAGTATCACTTTGGGAAAGACTCCGCTAATGGGGCGACACATTCTCAAAGATAATGGGACAAACAGAGCAATCCGCCACCACCATACTCCTCCTTTGGCCATAAAACAATGACCCGGGTGGATTGTAATTTGAGGAGGAGACCAGACGGGGCTGTAAGGATCTTCATTACAGTACAGACATTATGTTCCAAACTCTCCacaatcaaaatacacaaaatccCTCATAAAACAAGATGAAAAAACAGCCATGAAACCAGTGTTAGCACTTTGATAAAGACTCTCTTACAGAAGATAATCACTGCTTAGAAAAATCCAGtatgaacatgaacatataCTGGTGtacATTTGGCATAAAATGACTAAATATGCGACCAGATAATAATGCAACAGAATCTCTACCTGACATAGTATAATTTCAACCTGTGAGCAGTGGACTACCCTGAAATTGGGTTAATCTGCTTCATTATGAAGTAAAGCTAATGAATACACACTTCTGTAAGGGCTCCCTTGCTGAAGACTCATGGCTTTTCAGAACCAGGTGTACAGGAGTACGTTAATATATGACAGAAGTGATGGACATATTGGTGAGGAAAACCTGGAAACATACGTTACATTCAATATACAGCAATAATAAGAAGTGTTCATACATTCTAGCCAcgattgtttgttgtttttttcttttaagaactCTTTGCAAAACTAAAGTGATCCTTTACCTCAGGCTAAATCAGGTTTCAGGCTTTGATCCCAAATGTCAGAGATAATGAAATACTGCTTTGTTAATTTCTTGGCaaataaagaaaccaaaagaCACGACCAGAGATCTTCGAAGCATCTGAAACCAGTCGAAAACTAGAGACGACCAGGATCCAGCTAGTCCAACCTCCTGTTAAGGCTGCGACACAGTACCATTGACAGATTGTTGTGCCGCAACCCCCTCTAGTGGGGAACTGCTGTATAAACACCGACTGCAGCAGAAGACTCCCAGGAAAGGAGAAACAGCCAGCCAGCCCTAATCTTCGACAAGTGCATTCTCTCCACGCCAGCCAGGAAAGACCAAAAACCAGGCTGTGTCGTGCCGGAGAAGACAGGGCTTGAGATGCTTCAAAAATGACACTGGAAAACTAAATAGGCCCAAGCAAAAGACAGTCATTGCATACTTATTTCCTTATATGTGTACAGAAGAGCAATTAAAAGGATACATGCCACCCAGGACCGCAGGCacagcagccaatcagaagGGCTCATTGAGGACCTGCGTTTGAATTATGATGGTTTTCATAATCAGTTACGTTGTAGCTGCTGAGCCTTTTTGTGCCAGTTTATTAGGGCTAAGTAAATCTCAACCGGGGTGGCGTCGTCTGCGCTGCACTGTGGGCAGTAGACACCCCACAGAACAAGGCAGAGGGGGCCCGAGGTCTGAGAAAGTTTGCATGAGCCCAGAGCCTTCATCAGACTACAAAGCCTAAAGCACTGTGCTCTTAGCGGTCACGCCCAACCGCTTTTCCGGTGCCATTTGTTCCCATGGCTCTCTGTATGTGCAAGGCTTTTAGTTGGAAAACAGATAAACAATTCCCATGGACGGAGCAGCTCTGGATTTCACCCCCCAAGCCTTTTCGACAGGGCCCCCTCTGAAGTTGGCCAAAATGCTTAGCACACTGAGGTTGACGGTTGTCATTTTAGCTGCAAAGACCTCAATGCATCTTCTCTAAAATATGGCCTACAGTGCCTGCCTCCAGTCGTGCACATGTATCATTTTCTTGCTGTTGCCCCCACCATTATCCCTCTTCCACTTAGACCGATACAAATGATAATTAtagatgataaaaaaaacaccaagtaaacatacattaaaaaaaatatgatttaaaataaaaacaatacaagaggTCTGCTCGTTCGGTGTCCGCCTGTCTCTGATCCCTTTACACTGTAGTTCTCAGACGACGTTACATTTCGACACCCCAGTGAAGAgagaaagcaaaaaagaaaagggaatcaGATCAGACATGGAGATGAATGTTCTTTTGGACCTCTCTAGGCAAAAGCTTTCAACGGGATGTCTGAAGGatggtttgctttttttgtttttcttgtcttccAGTTTCACAACTGTGTTTGTTGgattaaacacacaaatgacAACTCTTCCAAGCAGATCCACAAACAAACGCCTCATGGAGCAGTACATGATGCGTTAACATCTGGGCTACAGCATTCACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152141 True 2982 lncRNA 0.43 3 6210585 6213660

Neighbor

gene id symbol gene type direction distance location
AMCG00002172 mrto4,LOC106582960 coding downstream 102101 6106190 ~ 6108484 (-)
AMCG00002173 megf6 coding downstream 124633 6033844 ~ 6085952 (-)
AMCG00002164 LOC107385009 coding downstream 307512 5888490 ~ 5903073 (-)
AMCG00002166 NA coding downstream 326874 5874782 ~ 5883711 (-)
AMCG00002157 LOC106565901,LOC108438575,LOC104956748,LOC102783840,LOC107751159 coding downstream 383060 5804842 ~ 5827525 (-)
AMCG00002177 NA coding upstream 33606 6247266 ~ 6247869 (-)
AMCG00002178 NA coding upstream 44387 6258047 ~ 6262305 (-)
AMCG00002185 rnf207b,LOC108434591,LOC107593377,LOC107712689,LOC106572244 coding upstream 143997 6357657 ~ 6381431 (-)
AMCG00002187 NA coding upstream 214705 6428365 ~ 6447619 (-)
AMCG00002191 espn coding upstream 237614 6451274 ~ 6500272 (-)
G121288 NA non-coding downstream 272752 5933658 ~ 5937833 (-)
G121274 NA non-coding downstream 336449 5871668 ~ 5874136 (-)
G121271 NA non-coding downstream 348943 5858001 ~ 5861642 (-)
G121188 NA non-coding downstream 982454 5227674 ~ 5228131 (-)
G121152 NA non-coding downstream 1073579 5128038 ~ 5137006 (-)
G121403 NA non-coding upstream 63808 6277468 ~ 6277902 (-)
G121443 rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460 non-coding upstream 168773 6382433 ~ 6385919 (-)
G121444 NA non-coding upstream 194045 6407705 ~ 6407915 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding upstream 199353 6413013 ~ 6413274 (-)
G121447 NA non-coding upstream 206381 6420041 ~ 6424298 (-)
AMCG00002167 NA other downstream 195192 5975725 ~ 6015393 (-)
G120993 NA other downstream 1990708 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 2424041 3784236 ~ 3786544 (-)
G120907 NA other downstream 2494333 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 2744124 3407485 ~ 3466461 (-)
AMCG00002223 NA other upstream 1612981 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 3395090 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 3543765 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 3616859 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 3623258 9836918 ~ 9853075 (-)

Expression


Co-expression Network