XLOC_036075 (cacna1db)


Basic Information

Item Value
gene id XLOC_036075
gene name cacna1db
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53423408 ~ 53436880 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070604
ATGCTGACTGTGTTCCAGTGCATCACTATGGAGGGCTGGACAGATGTGCTGTACTGGATGAATGATGCCATGGGTTTTGAGTTGCCTTGGGTTTATTTCGTCAGCCTGGTGATCTTCGGCTCCTTCTTCGTCCTCAATCTAGTGTTGGGAGTTCTCAGCGGTGAGTTCTCCAAGGAGCGCGAGAAGGCTAAAGCCCGCGGAGATTTCCAGAAGCTGCGTGAGAAACAGCAGCTGGAGGAGGATCTGAAAGGTTATCTGGACTGGATCACTCAAGCTGAGGACATCGACCCGGATAATGAAGAAGAGGGAGATCAGGAGGCCAAACGCAACCCGAGCGTCCCGACCAGCGAAAACGAGTCTGTGAACACTGAGAACCCAGGAGAAGATGAGAAGATCTTCTGTGGGCCTTTCTGCCGCTGGCGGTGCTGGAACAGGTTTTGTCGCAGAAAGTGTCGAGCCGTGGTAAAGTCCACCGTATTTTACTGGCTGGTGATTCTGCTGGTGTTTCTCAACACACTCACGATATCATCCGAGCATTATAACCAGCCCGACTGGCTCACGGAGGTCCAggATGTGGCTAATAAGGTGTTGCTAGCGCTGTTCACATGTGAGATGCTGATTAAGATGTACAGTCTGGGACTGCAGGCGTACTTCGTGTCGCTCTTCAACCGATTCGACTGCTTCGTGGTGTGCGGAGGAATCGTGGAGACCATTCTGGTGGAGCTGGAGATCATGTCTCCGCTCGGCATCTCCGTCTTCCGCTGCGTCAGGCTCCTGCGGATCTTCAAAGTCACGCGtcaCTGGGCATCTCTCAGTAATCTGGTGGCGTCTCTGCTGAACTCCATGAAGTCGATTGCATCTCTGCTGCTGTTGctcttcctcttcatcatcatcttcagtcTGCTTGGCATGCAGCTCTTCGGCGGAAAGTTCAACTTCGATGAGACTGTGACCAAACGCAGCACTTTCGACAACTTCCCTCAGGCCCTGCTCACCGTCTTTCAGATCCTGACGGGTGAGGACTGGAACACAGTGATGTATGATGGGATCATGGCATACGGCGGACCCTCTTCATCAGGCATGCTGGTGTGCATCTACTTCATCATCCTCTTCATCTGTGGAAACTACATCCTACTGAACGTCTTCTTGGCCATTGCTGTGGATAATCTGGCAGATGCGGAGAGTCTGAACTCAGCccaaaaagaggaggagaagaggaACAAGAGGAGGAAGAGCAGGTGA

Function

symbol description
cacna1db Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in calcium ion import. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human CACNA1D (calcium voltage-gated channel subunit alpha1 D).

GO:

id name namespace
GO:0070509 calcium ion import biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0005262 calcium channel activity molecular_function
GO:0008331 high voltage-gated calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040525-3 Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in calcium ion import. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human CACNA1D (calcium voltage-gated channel subunit alpha1 D).

Ensembl:

ensembl_id ENSDARG00000110642

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070604 True 1242 mRNA 0.52 9 53423408 53436880

Neighbor

gene id symbol gene type direction distance location
XLOC_036074 dcp1a coding upstream 21617 53388005 ~ 53401791 (+)
XLOC_036073 BICD2 coding upstream 45310 53344726 ~ 53378098 (+)
XLOC_036072 gnb1a coding upstream 88758 53269657 ~ 53334650 (+)
XLOC_036071 cacna1db coding upstream 162738 53204017 ~ 53260670 (+)
XLOC_036070 NA coding upstream 271315 53143211 ~ 53152093 (+)
XLOC_036076 cacna1db coding downstream 15801 53452681 ~ 53456702 (+)
XLOC_036077 cacna1db coding downstream 27336 53464216 ~ 53465017 (+)
XLOC_036078 CU638702.1 coding downstream 59321 53496201 ~ 53498302 (+)
XLOC_036079 CACNA2D3 coding downstream 127069 53563949 ~ 53665111 (+)
XLOC_036080 NA coding downstream 459206 53896086 ~ 53896991 (+)
XLOC_036065 dre-mir-181b-2 non-coding upstream 399644 53023679 ~ 53023764 (+)
XLOC_036064 dre-mir-181a-2 non-coding upstream 399791 53023539 ~ 53023617 (+)
XLOC_036063 NA non-coding upstream 403928 53018176 ~ 53019480 (+)
XLOC_036062 NA non-coding upstream 405851 53017077 ~ 53017557 (+)
XLOC_036083 CABZ01066578.1 non-coding downstream 590802 54027682 ~ 54034515 (+)
XLOC_036086 NA non-coding downstream 677156 54114036 ~ 54134106 (+)
XLOC_036088 NA non-coding downstream 724260 54161140 ~ 54163747 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_00302983_00357876 CACNA1DB, CACNA1D coding CI01000050 null 302983 ~ 358292 (+)