XLOC_036074 (dcp1a)


Basic Information

Item Value
gene id XLOC_036074
gene name dcp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53388005 ~ 53401791 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070603
CATAAGTCGAACCGGAAGTGCTCATCCAGAAAAGCGCTCCGTATGTTGATAGAAGATGGAGTGTGTGAATAAAGCGGGTCAGCTCATGAGTTTAGCGGCTCTACAGCAGCATGATCCCTACATAGTGAAGTTGCTGGATGTGACCGGACAGGTCGCGCTTTACACCTTCAACCCCAAAGCCAACGAATGGGAGAAGAATGAGATTGAAGGCACATTATTCGTTTATGCCAGgtCGGCATCACCACATCATGGCTTCACAATTATGAACCGTCTGAGTACAGAAAACTTGGTGGAGCCCATTAATAAAGACCTGGAGTTTCAGCTCCAGGATCCTTTCCTGCTGTACAGGAACGGAAACTTGGGCATCTACAGTATCTGGTTCTATGATAAGGCCGACTGTCAGCGGATCGCTCAGCTCATGCTGCAaataGTGAAGCAGGAGTCGTTGCGAGTGCAGTGTGTGTCTCCAGACAGAAGTGTGAGCATCAGGACCAATGGCTGCGTTCAGAACAGACCCGCAGGCATCCTGGAGCTGCTCAGCAAAGCCAAAGAGGAGTATCAGAGGAGTCGGTCGACTGAGAGAGATGTTCCGGTGAACTGTGAATCACAGGAGAAGAGAGAGGACGTCACTGCAGCTCAGCATGAGAAGTCCAGTCACTCAGTAGTGAAGCAGATCACAGTGGAGGAGCTTTTCGGCAGCTCTTTACCCAAAGATCCTCCTCCTTTGTCCTCGATCTCAGCGGTGGGAGAGGGTCTGGGTCTGCGTGGGATCCCATTCAACCCTGCGCTGGCTCCGCGGCTGTCTTCTGACCCCGGGGGCCCGCCGCTGCTCAGTCTGCTCCAGCCCAGAGACCCTCGGACATCAGCAGAGGAGACCAGCGCTCCTCGCGGCTCCACCAGCCCCTTTCCTCCAGCGTTCATCAGTGCGGACGCTCATGGGATGCCTGTTTCTCTGCCCGGGTTCATGCCCAGTCCTCTGGTCACTCCGCAGAGCTTCAGAGATTCCGGCTGCAAAACCTCTGCTCCGTTCTCCGGGAAGACTGCAGCTTCAGCACCGGGTAAAGAAGTGAACGCCTTCACGCAGCCCCCGGCTCTGGTCAAACCCGTCCCAGCGGGGCCAGTTGTCCAGGGGGAGGAGTCTTCACTGCTGCTGTCTCCCAGTGTATTCCAGCATTCCGTCAACAAGGCGACAGAGGCAGGCAAAAGCTCCGCCTCCCCGACGTCCCCCACAGACCCGCCCACTGCGCTGTACAGCAGAACTCAGCTGCaggacacactcatacacctcaTCAAGAATGACGCACAGTTTCTCAACACCATCCACGAGACCTATGTACAGAGCCTGTCTAAAGGCCTCAACAATGTCAAGTTATAGCCATCAACTGCATCTCCATCATCCAGCGAGATCCAGCATGACGCTCCGTGTACATCGACTAACAACCCATCCACACCATAAGACTGCAGCATTACTGAGGTTCACCAATGAAAATACTACATAATGATTCTGCCAGCACAGTTATGCCACATTCATTAAGGGACTTGTGCAATATATGAAGCCCTTTTTTTGTAGAATAGCTCTTCATTTATGACCTGGATAGGATTTAATATCCTGCTCTCAATGGTGTATTACTGTTAAAACATCAGTAATGCGTTGGAGATCTGCTTGAGTTTAGATATTGAAGACGTCGAGATTGTAGgatgtgcactttttttttccccTACAAGCTTCGCTATTTAATTTGGACTTAAAATGAATGTTTGAAATGAATTAAAGTGTTCggatagtaaataaaaaaatatttgaagcaGGGTAACACCTTACCTTAAGGGgcgttcataagactgtcataagACTTTTATAGTCATGACATAACACATGGGATttcatgcatgcttatgacaaccgTTTTTAAGCGTCATTCACTCAGTTAtggcattttaaatgcaaagatgacactgTTTGTTATGATAACTTGAGATAAATGCATCATAACCGGTCTTTGTCTTTATGACAACTTTAAGACAACAAAACccgtcataaatctgtcataaacatgattgtcgtCATAATTTTTCTGGTCATGTTTTTAGTGACACAAATTGTATTTGtaatttaaatgtctaattaaaAGTGTCATAACCTGTTATAAAGCATTATTAACATGTAAAAACACTTTAATGGCAAATTCAGCTTGTTTTACTGTAGTTGAGTTTAAAAGATGTATATTAATGACACCGTTATAAAAGTCATGACATATTTATAATagcttcatgacaatcatgtttatgacagatttatgacgagttatgttgtcttggtaatgtcaagttgtcataaagacAGATGCATTTAAGTCAAGCTTTCATAACGcgcaatgtcatctttgcatttaaactgACATAACTAagcgaatgacacttaataacagctgttataagcatgcataaagtcTCATTCACTTTGATGTGTCATATCATGATAACAAAGGtttaatgacagtcttatgaacacccctttagtaaagtgttaccgaaagcAGTCTattaaatgttgtgttttttaaaatcgCAGACAGATGAAAAACTGTAATGCTTTATCTAAAGTCAGATTCATTAAATTAGAGCGTTTATAACACACTCTGATGATAGCTACAGTAGTCTGAGTATTCAGCAAGATCAATTACATTTCATTTCATCTTCAAAAGTGCAGTGAAATGCTTTCTCTTTGCACTGTTGcacattaattgtgtttttaaattcgCAGACGTGTGTACTTGTGTTTACACTTACAAAAGGCCATCATGATAAGGGagtttcatagtatttttttctgcagtttGCTTTTGATAGTATGGAGAATAGAGTCTGACCACTAATGAGTTATTTACTGACGTCACATTAATACGCTCTTCAAATGATTTAATAATGTCTAGTCTGTTGCAGCAGGATCCTGTTACTGTCTTTTGAGTTCatgttcaaataaataataataggcaTAATTCAGATCATTGTTTGTACTGAATTACTTTGAGAATTGCAGTCGCTATACTTAACTAATGCCTTTGTGAAGAGTATAAAGGCCTATActctatagttgtagaaaaccaCAGTattctgtcatttgtttgttaCTATAGATgttagttaccatagcaactatagaatcaccacaacaggtcAATATAgtggttgttaccatagcaactaaagaataACCACATTTCAATTACTATtgtcgttgtgttaccatagcaactgtagaatcaccacaacaaatcaattactgtagttgttgtgttaccatagcaactgcacaatcaacacaacagatcaattagtagTCACTGTGTTATCCTAGCAGCTgcaaaatcaccacaacagatcaagtagtatagttgttgtgttaccgtagcaactgtcGAAgcgccacaacagatcagttagtGTAGACATTGTGTTacccagaggtgtggactcgagtcatgtgacttggactcgagtcagactcgagtcatgaatttgatgactttagactcgacttgacaaaatataaaaagacttggaactcgacttggacttgagcataaatgactcggactttgactaggacttgcccctattgacttgtaaagacttgctgcttcccatgaaaagcccaacgataaaaaagtatgttgacatcatgacatggaccgctctctctctctctccgtttgtgtgtgcgtgtgtgtgacagcgcgcgcgtgtgtgtgtgtgacagcatgcgcgctttcggcatgacatccaatcaaagcacggtagattgttttgattcgacagtatccaacgtgactactatgaggcgccggagtggacaaaagtcaagcgaacgcagagagaatttgaatttgaacttgagatcgagccaatactcgccaatagtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgtgcattcagtctctttgcgttcgcttgacttttgtctacgatggcgtctcatacctttagtgcttttgctctcacgggatcctcgttttaaactgacccttcactaagccacgcccaaaaaccgccacccaccaatcgcggcttaccaatcgtagctacgggcagaggctctgtcaagctttcgagcgagggaaacaagccaaatcgttgcgcaattggattgtgcaaatctgacacccgctatcctaaaagtttggactgggtggtgggattttttccccttttcaaaaccaaagcccaagaggagaaatgccagcgtggatcaatctgtgtgaggggcggtaaaggagttaagctaagttggttttgttttcgatattcacattcagtgataggtggcaataactcacactcctcttatcctaaacagatctaaactgtgtttcttataaaaaaaaaaaaaaaaaaaaaaaaaaaacaaagcaggttatgtttcccagcggtctttttctttttttccactcgatattatgagcactgcttagtttaaaccctcgctattgtaacgtataaatacatacactaatatttgcttgtaggaaaaatctatttgttcacttctattatttatactttgatttgcatttcaatttttttttcttccacttaactgcaaatttgaataaaaactggataaagagcacacaaacatgctgacagtaatgggtactgtacactgttatgggtcaatgatgctaatattcggcacaaatccatcagtttcttaggttattagattatttttataattttctaataggcgtagcaacagtaactaaggagggcgaggcttagcgaaggattattccaagaatgttgatatggtttctttcttgctttactatttattaacaatacacaaaaaactaaaaggttaaggtaaattctttaataaattctagtgtttttgagtattatacttgttgtatacttgtattatacttatgttttaggctagtattatttacgacttgttaatt

Function

symbol description
dcp1a Predicted to enable mRNA binding activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA and deadenylation-independent decapping of nuclear-transcribed mRNA. Predicted to act upstream of or within nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and positive regulation of catalytic activity. Predicted to be located in nucleus. Predicted to be active in P-body. Orthologous to human DCP1A (decapping mRNA 1A).

GO:

id name namespace
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA biological_process
GO:0000932 P-body cellular_component
GO:0030234 enzyme regulator activity molecular_function
GO:0003729 mRNA binding molecular_function
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
ko03018 RNA degradation
ko03019 Messenger RNA biogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030723-5 Predicted to enable mRNA binding activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA and deadenylation-independent decapping of nuclear-transcribed mRNA. Predicted to act upstream of or within nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and positive regulation of catalytic activity. Predicted to be located in nucleus. Predicted to be active in P-body. Orthologous to human DCP1A (decapping mRNA 1A).

Ensembl:

ensembl_id ENSDARG00000100136

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070603 True 5086 mRNA 0.42 10 53388005 53401791

Neighbor

gene id symbol gene type direction distance location
XLOC_036073 BICD2 coding upstream 9907 53344726 ~ 53378098 (+)
XLOC_036072 gnb1a coding upstream 53355 53269657 ~ 53334650 (+)
XLOC_036071 cacna1db coding upstream 127335 53204017 ~ 53260670 (+)
XLOC_036070 NA coding upstream 235912 53143211 ~ 53152093 (+)
XLOC_036069 nr2c2 coding upstream 245937 53120278 ~ 53142068 (+)
XLOC_036075 cacna1db coding downstream 21617 53423408 ~ 53436880 (+)
XLOC_036076 cacna1db coding downstream 50890 53452681 ~ 53456702 (+)
XLOC_036077 cacna1db coding downstream 62425 53464216 ~ 53465017 (+)
XLOC_036078 CU638702.1 coding downstream 94410 53496201 ~ 53498302 (+)
XLOC_036079 CACNA2D3 coding downstream 162158 53563949 ~ 53665111 (+)
XLOC_036065 dre-mir-181b-2 non-coding upstream 364241 53023679 ~ 53023764 (+)
XLOC_036064 dre-mir-181a-2 non-coding upstream 364388 53023539 ~ 53023617 (+)
XLOC_036063 NA non-coding upstream 368525 53018176 ~ 53019480 (+)
XLOC_036062 NA non-coding upstream 370448 53017077 ~ 53017557 (+)
XLOC_036080 NA non-coding downstream 494295 53896086 ~ 53896991 (+)
XLOC_036083 CABZ01066578.1 non-coding downstream 625891 54027682 ~ 54034515 (+)
XLOC_036086 NA non-coding downstream 712245 54114036 ~ 54134106 (+)
XLOC_036088 NA non-coding downstream 759349 54161140 ~ 54163747 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_00286164_00294317 NA coding CI01000050 null 285258 ~ 294317 (-)
rainbow trout (Oncorhynchus mykiss) G1895624 NA non-coding NC_048588.1 CM023242.2 5707646 ~ 5709248 (+)