CI01000050_00286164_00294317


Basic Information

Item Value
gene id CI01000050_00286164_00294317
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 285258 ~ 294317 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00286164_00294317.mRNA
TCACAGTGAAGATGGAGAGTGTGAATAAAGCGGGGCAGCTCATGAGTCTGGCGGCTCTACAGCAGTATGACCCCTACATCGTCAAACTGCTGGACGTCACCGGACAGGTCGCGCTCTACACCTTCAACTCCAAAGCAAACGAATGGGAGAAGACTGAGATTGAAGGCACGTTATTTGTTTACGCCAGGTCGGCTTCCCCTCACCATGGCTTCACGATTATGAACCGTCTGAGTACAGAAAATCTAGTGGAGCCGATCAATAAAGACTTGGAGTTCCAGCTCCAGGACCCGTTCCTACTGTACAGGAACGGCAACTTGGGCATCTACAGCATCTGGTTCTACGATAAGGCCGACTGCCAGCGGATCGCGCAGCTCATGCTACAGATAGTTAAACAGGAGGCGTTGCGAGCGCATCGCGTGTCGCCCGACGGAGGCTCGAGCGGCAGGACGAACGGGTGTGTTCAGACCAAACCCACAGACATCCTGGAGCTGCTCAGCAGGGCGAAAGAGGAGTATCAGAGGAGTCAGTCGACAGAGAGGGATGTTGAGGTGAGCTGTGAATCTGTGCCGTCACAGGAGAAGAGAGACGACATCACAGGAGCTCAACAGGAGAAGTCGAGTCACTCAGTAGTGAAGCAGATCACAGTGGAAGAGCTTTTTGGCAGCTCTTTGCCCAAAGAACCGGCCCAGACAAACTCGGCTGTGGTAGAAGGCATGCGTGGACTGACGTACGGCCCTCCACCCCGCTCCGTGGAGCCTCTGCTCACTCCTCGCCTCTCCTCGGACCCAGGAGGCCCAGCGTTGGTCTCTCTTTTCCAGGGTTGCAGCAGCCGAGACCCAAGAACAAACGCTTCAAATACAGAGGAGAGCGGCAGCGGGTCTGGCGGTCAGTCGGCACGTCGTGGTTCGGCTGGTCCGCTTCCCCCTGCATATATGAATCCTCTCACAGATGGTCATGTGACAGCCGTGTCACTGCCAGGGTTCATGCCCAGCCCTCTAGTCACGCCACAGAGCTTCAGAGAAACCGGCTGCAAAGTTTCAGTGCCCTTTACAGGAAAGGCTGCAGCGTCGGCACAGAGTAAAGAGGTGAACGCCTTCACACCGTCCCCGTCTCTAGTCAAAGCGGGGCCAGGTGTTCAGGGGGAGGAGTCTTCACTGCTACTGTCTCCAAGTGTATTTCAGCACTCCATTACCAAGACAACAGAGCTGCCCAAAAACCCCGCCTCCCCGACGTCTCCCACCGCCCCGTTTCCCAGCACAGACCTGCCCTCCTCCCTGTACAGCCGCAGCCAGCTGCAGGATACGCTCATTCACCTCATCAAGAACGACGCTCATTTCCTCAGTGTGATCCACGAGGCCTACGTACAGAGCCTCTCTAAAGGCCTCAACAACATCAAGCTATAGCCGGAGCCGTCTCGGATTCATCCCATCTGCCAATCTCACTATTTCAACCAGCTCAATTATGTTCAGTTATGAAAAGGAAGGGACTTGTGCAATAAGAAGCATTGGATAATTGCTTTTCATTTATGACGTATGGATATGATACAGTATCCCAGTGTCGGTAGTGTTTTACTGTTAAACCAGTGTGTTTGTTTAGCCCTGAGTATTGGATTGAAATCTCGCAGATTTTGACGACATTGAGAGTAGGATGTGCACTTATTACTTCTTTACTTACAAACCCGATTGTTTAATTTGAGTCTAAAGATGACGAATGCATAAATTAAAGATGAATAGAGTTAAACGTTTCCCCCGTGATGGCACAGTTGAACCGTTGTGTTCAGGTTGTACATTCTGTGGTGACGTGTTGCTTTTTTAAATTGCAGACCGTAATATGAAATATTGGGATATTTAAAGTCAGATTCTGAACTAATCATCTAGTTTAAGATGTGATTCTAATAGTTGTTGTCTGTCTCAACAGCAGAAGAGTAGTTGTCCATGTAGACGACAAGATAATCTAACAAGTGCATTTAATTTCATCATTAAAGGTAGAATGAAATTGTTCCTGTGTGCACTAACTAGTTCATGGTTTTTTTGTTTGCTTGGCAGGAATTGTATTTTTTAATACGCACAAGGCTTATGTACTTATTGTGTTTACACTTACAAATTGGGAATTGCATAAACTTATTTTGTACAGTTTGCTTTTGAATATCAGAGAGAATTTTAAAAGCTCAGCACAAATGAAAGTTGACAGTGTTGCTGCAAGGCTGTACTCTTCTCACGCAACGCTCTTAACATGAATTAATAAGACCTTATCTCGAATGCTTCAGGATTCTGTTACAGTGGTTCGTCTTGAGTTCATGTGCAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00286164_00294317.mRNA True 2309 mRNA 0.48 10 285258 294317

Neighbor

gene id symbol gene type direction distance location
CI01000050_00278324_00281820 NA coding downstream 3438 278131 ~ 281820 (-)
CI01000050_00272347_00273047 NA coding downstream 11317 270941 ~ 273941 (-)
CI01000050_00219042_00231878 NA coding downstream 53380 218825 ~ 231878 (-)
CI01000050_00160246_00185242 NA coding downstream 99916 159328 ~ 185342 (-)
CI01000050_00071592_00091705 PRICKLE2A coding downstream 191687 71364 ~ 93571 (-)
CI01000050_00362015_00370409 TMCC1 coding upstream 66083 360400 ~ 370409 (-)
CI01000050_00468156_00477480 CRELD1 coding upstream 173051 467368 ~ 477480 (-)
CI01000050_00552377_00552664 NA coding upstream 257172 551489 ~ 552861 (-)
CI01000050_00560254_00585128 BRPF1 coding upstream 265666 559983 ~ 586312 (-)
CI01000050_00662789_00668402 NINJ1 coding upstream 366759 661076 ~ 668402 (-)
G213176 NA non-coding downstream 17811 262130 ~ 267447 (-)
G213260 NA non-coding downstream 35521 249445 ~ 249737 (-)
G213188 NA non-coding downstream 39102 205108 ~ 246156 (-)
G213265 NA non-coding upstream 2920 297237 ~ 297641 (-)
G213289 NA non-coding upstream 119061 413378 ~ 413588 (-)
G213297 NA non-coding upstream 139390 433707 ~ 434206 (-)
G213298 NA non-coding upstream 140246 434563 ~ 434797 (-)
G213299 NA non-coding upstream 144510 438827 ~ 439030 (-)
G213174 NA other downstream 32196 235551 ~ 253062 (-)
G213171 NA other downstream 267277 16080 ~ 17981 (-)
G213429 NA other upstream 535025 829342 ~ 829802 (-)
G213497 NA other upstream 689161 983478 ~ 996539 (-)
G213704 NA other upstream 1018666 1312983 ~ 1317106 (-)
CI01000050_02230904_02233429 NA other upstream 1938331 2228865 ~ 2233429 (-)
G213948 NA other upstream 2034196 2328513 ~ 2331316 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036074 dcp1a coding NC_007119.7 CM002892.2 53388005 ~ 53401791 (+)
bowfin (Amia calva) AMCG00017245 dcp1a,LOC102792442 coding CM030122.1 CM030122.1 51693098 ~ 51712522 (-)