CI01000050_00272347_00273047


Basic Information

Item Value
gene id CI01000050_00272347_00273047
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 270941 ~ 273941 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00272347_00273047.mRNA
ACTTTTTTTTCATGGTGTGACAACAAAAATTAATAAAAAAAAAAAAAAAAAAAACACGTACCCCCGGTTTCACAGACAAGACTTAAGCTAACGTTAGTCCTAGACTAAAATGCATGTTTGAGCTGTTTTAACTGAAATCAATTTGTAGCCTACTGACATATCTTAAAATATGTCAGAGCCATTGTTTTGTCTCAAGATGCACACCAGTACTGTTTTTTTTTTCTTCTAATGAGCCTTTATAAAAGCCACTTAAATGCCCTAATTGAACTAAGGCCTAATCCTGGTTTAGTCTAAGCTCTGTCTGTGAAACCAGGCCTTAATAATATACAAACAGCATGAGAGAGATTTACCTTCATTGAGATTTATCTTCATTGTTTTCAGTATGCTCGACTACAAAAGAGATGTCAAAGCGCTTATTGCCCTCACATGACCGTTTAGATGAATTTATTAAAGAATACATTACATTACCTTCTCTATCGTTTCTTTAACTCTGAAATTATTCAAACAAAGCCTTTTTCTCCTTACTTTTCCCTGTTAAAATTAGGTAGTATTGGCAACAACTAGAAAACGACGAATAATTTAAAGGTAATGTCATCTCTAAACTGGACTAATTTGTCCAGTCACACTACAAGTGTGTTGTTTTAGTGAAGGTAGTTTTAGGCTTCATGTCGGAAAAACAATAGCCTGTGTCTTATATTTTTATATCGCTGACCCTGTTTTGTCTTAAAGTAAATAGAGCAAATGGAGTCGATTCCGGAAGTCCTATGCTGGGATTAGACTCTGAAAAACCTGGAATCGAAAATCCTTCTGTTGCCAGATTGGGTCGACAATTTCCAGTCCAAAAGTAGGCCTGTCTCAACTACCCTTCATGCGCAGATACTCAGTCCAGCTAAGATGAACACAGTGTCCACTGCCAGGTATGTCAGGTTAAATTGGTTCGTCATTTGCTTTGGTGGAGATGTGACCCAGGAGGAAAAAGGAGAAGAGCTGCTTCAGCAGGAGGAAGAGGAGGATCATGGGTTCACAGAAGACAGAACACCAGCAATAGCAGCACATACAGCTCTTGAGGTGCTCTTCAAAGACGAAGACCAGGCCCTGCTGAAAACAGTGAAGATAAACGTCACTGAAAAGACCAAAAAAGAGGTACAGGTGTACCAGAGCTTCCCGGCAGTCCTAAGTTCAGCGGATCCTATCCGGTGGTGGAGGCAGAAGAGGGACCAATGCTGGCCAGCATCTCTGTGTCCAGGCCTCTTCTACGACCTCAGAGCGGGAAAAAACCCTGTTGGGCACTGAATTTCAGGTACCAGTACCGGTTAAAATGTGAACAGAAATATAAATATATAATCTAACGCGCTTCTTGTTTCGGAGTAAAACAGCTTTCAGTTTCCATTCACAGTAAATGCTGTGTTTCACTCGCTTATCATTTACATTGTGAACGCAACGTGCGCCAACCATCTTCCCTAATTCACAGTGAGAATCGTTTATAAATCTGTTGTTGTCAACAAAGAGAAGCATTAAGGCTGTCAAAATTACGTTTGAAAGCAAGGATTTAAGACGTCCATAAATGTTAGTATTGGAAATGTACTGTTCTTTTAAATAAAATAATAATACTGATAATAATAATAAATAGGCTAATATTGTTATAAATAATAACAACAACTCTTAATGCTTTTATTATAACATATTGTGTTATAATGTAATATTATTAATAGAGATGCACTGATACTAAATTTCTCCACCGACACCGATAGCCGATTATTCAGTGATATCTGCCGATACCGATAGTTTTGGTTCTGCTTTTTATACCTTCTTTTAAATTAATGATCATTTTTATTATAATTAATAACTATATCTTTAATTATTATATTTTGAAGGAAATGCAAATAAAAACTTTATTCTCTCCATTTCATCAACTTGTTTCAGAGTAACTGGTATCAGTTATAACCATAAACACATTACTCTAATTAATATTAACACACATTAACTAAATTCTGAAGATTAAAGTTATTTCTTAAGAAATAACTTTCTCAACTTTCCGAATGTTATTAATTCATATAATTATTAATTACTATATGATATTAATTACTATTAAACTGGTTTCTTAGCATTTTCTTTACAGAAAGCCCAAATTCAGAGCATTTTCCTGCCCTCTTTTGATTGACAGGATATATCAGCTCTGACTATCAGCTGTTTTTAAACTATCAGCCGATAGTGTGAAAATTTGCTTTTATCAGCCGATACCGATTATTGGCAGATATATCGGTGCATCTCTAATTATTAAGATTATTATAAATAGACTAGGTGATTATTATCATTATATTATTATGTATTATTATATATTTTTTATATTATTATGACCAGTTGTCATTGGAGGGTCAGGACTGTTGTAACGCTATGGTTCCAATGAATATGAAGATAAAGATTCAATAACAGAAGATTTATTACGGATGCGATAACAAGCCAACATGCGAGACAGAGTGCACCGAACACAAACAATACCGGACACTAAACTGAGGACGAACAGGAACTTAAACACACAGATGATTAACTCGACGAACAGCTGTGATGATTAGTTAGTGTCAATGAATGGCGGTAAATGAACAAAGAAGACACGTGACAATTAAAAACAAACTGAAGGTCCATGAAAACAGAAACTAACAGATGATAACTGACAACTGTGTTGAGAAGGATGTAATAAA
>TU241931
GTTATTTCTTAAGAAATAACTTTCTCAACTTTCCGAATGTTATTAATTCATATAATTATTAATTACTATATGATATTAATTACTATTAAACTGGTTTCTTAGCATTTTCTTTACAGAAAGCCCAAATTCAGAGCATTTTCCTGCCCTCTTTTGATTGACAGGATATATCAGCTCTGACTATCAGCTGTTTTTAAACTATCAGCCGATAGTGTGAAAATTTGCTTTTATCAGCCGATACCGATTATTGGCAGATATATCGGTGC

Function

NR:

description
PREDICTED: zinc finger BED domain-containing protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00272347_00273047.mRNA False 2699 mRNA 0.35 3 270941 273941
TU241931 True 263 lncRNA 0.31 1 271374 271636

Neighbor

gene id symbol gene type direction distance location
CI01000050_00219042_00231878 NA coding downstream 39063 218825 ~ 231878 (-)
CI01000050_00160246_00185242 NA coding downstream 85599 159328 ~ 185342 (-)
CI01000050_00071592_00091705 PRICKLE2A coding downstream 177370 71364 ~ 93571 (-)
CI01000050_00278324_00281820 NA coding upstream 4190 278131 ~ 281820 (-)
CI01000050_00286164_00294317 NA coding upstream 11317 285258 ~ 294317 (-)
CI01000050_00362015_00370409 TMCC1 coding upstream 86459 360400 ~ 370409 (-)
CI01000050_00468156_00477480 CRELD1 coding upstream 193427 467368 ~ 477480 (-)
CI01000050_00552377_00552664 NA coding upstream 277548 551489 ~ 552861 (-)
G213176 NA non-coding downstream 3494 262130 ~ 267447 (-)
G213260 NA non-coding downstream 21204 249445 ~ 249737 (-)
G213188 NA non-coding downstream 24785 205108 ~ 246156 (-)
G213256 NA non-coding downstream 31016 239663 ~ 239925 (-)
G213201 NA non-coding downstream 140135 119647 ~ 130806 (-)
G213265 NA non-coding upstream 23296 297237 ~ 297641 (-)
G213289 NA non-coding upstream 139437 413378 ~ 413588 (-)
G213297 NA non-coding upstream 159766 433707 ~ 434206 (-)
G213298 NA non-coding upstream 160622 434563 ~ 434797 (-)
G213299 NA non-coding upstream 164886 438827 ~ 439030 (-)
G213174 NA other downstream 17879 235551 ~ 253062 (-)
G213171 NA other downstream 252960 16080 ~ 17981 (-)
G213429 NA other upstream 555401 829342 ~ 829802 (-)
G213497 NA other upstream 709537 983478 ~ 996539 (-)
G213704 NA other upstream 1039042 1312983 ~ 1317106 (-)
CI01000050_02230904_02233429 NA other upstream 1958707 2228865 ~ 2233429 (-)
G213948 NA other upstream 2054572 2328513 ~ 2331316 (-)

Expression


Co-expression Network