CI01000050_00071592_00091705 (PRICKLE2A)


Basic Information

Item Value
gene id CI01000050_00071592_00091705
gene name PRICKLE2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 71364 ~ 93571 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00071592_00091705.mRNA
ATTTAGCATGTTTTATATACCTGTCTCTGCAAATGTTCAAACATGCAAACCTCTAGACAGGTTTTATTATGATGTAATGTAACTTTGACAGAGTGATGCAATTTATTTGCTTCAAATGGATTGTTTACCTATGCTGTGTATCTGTCCTGTTCATATGTCGTGGGGTTTTGGGCCTCAGTCATGATTGCCACTCACATTTGTGATTTGTGTCATTTTTTGTATGGTAAAAAGCATGTGCTAAGAACACACATGTAAAATAAGCAGAATTGTGATGTTATAAAGAGTTTACAGAGACATGAAGGTCAACATCAGTCCTTTAGCTGAGAGCTTGCTCTCATGTTGCCTATTGCACAAATAAGAAATTCTCTCTTTCCCGTCTCTCTCTTTCTCCCTCTCTCCCTCCCTCCCTTTCTTTTTTCTTTCTTTCTCACACACACCCACACAGAAACAGTCAAATCCACAGGCAGAGTGAGAGCGAAGGATGAGGCATGACACATAAAAGAGAAAAACGTTTATTTTCGCTTTGCTTTAGCACTGCGCTTCTCTTTTTTTTTTTCTCTATTTCTGGTTCTCTCAGCCCTCAGGTTATTTTTTGGATACTGATATGAAGATGCAGGTCTGTATGCCTTTCATCAGAATTGTTAAACAGGAGAGTGTTGTATCTTTGCAGCGATATCATAAGACAGGCTTCCAATATCTATTTTAACATACAGTCTCTACTGTATGATTAGTGAATCGGTGTATTCTTTTCATGGATTTGATCTCATAGCATGCTACTAGAAATTTCTTTGATTGTTGTATTCATATTTTTTCATTCTCTCCTTGTTTTTCCTGCTAATTAAAAAAAATAAATAAAATAATGTTCATGTGGTGCGCAAGTTTGTGATGTCACAATGACGTCTTGTGTGGTATAAGATTGTATAATGTATAATGTGAGAAGACGCTTTTGGGTATAGAGGTTCATAAACCAAAATCAATCAATTACATTTCACAGAGATCAGAAAGTACTGGTGATGATCACAATAATCTCTGTGCTAAAATGATGTGAATTTATCATGCGTGGCTGAAATGTTGCTGCAGATATGTTGATAATTGCATCAGTATTAAATTTTTTCTCAGCACGATTCAAACAGGCACACAAACATGTTTTTAAAGACGTTTTGATGCATTCAGGTGGCTTTGTCTTGTACATTGCTCCAGAAATCCCAAAAATGTTTTTTTTTCCATGTACTGTGTAGTTTTTTAGATAATGAAATATTGGTAAATGTTGGTATTCTTTGATAATGGTTACCTTAGAAGAGCTGCTTCTATATGATCTAGCACTTAAGAATGTTCAGGTGGTCACTTAAATGTAAATGATCATTTTTCCTGTCTAAATGTAGTGTTTTGAGTATGTTTTATGAGTTTGCTTATTGCGTTACATTCCTAAGTATCAGTAAATGAGTTGGAAGATTGAATTTTCATGTAGTCCATTTCAATTAATTTTATTTCAGTACTCTGCCAGTGTCCTCACATTTGAGCATTTGGTAAACTGCTTTAATAAAACTTTATGGGGACATTTAGTGTATAGTATAGTAATACCAGTAATTTGTGACCTTATGGGGACATTTTTTGGTCCCCATGTGGAAAACAGCTTCATAAATCATAATAAGTGACATTTTTTGACAATGTAAAAATACAGAATGTTTTCTGTGATGGGTAAGTTTAGGTGTAGGGTTATTGTAGTGGGAGAGAATATACAGTTTGTACAGTATAAAAAAACATTGTGTTGATGGAAAGACTATCTGTAAAACATGCTTACAACTATATTTCTCATTCCTGTCTGTCTGTGTCTTTCTGCAGTGATTAATGGTATGAAGTGGTGATATGGCTCTGGATATGGAGAGAACAGTCTCTAAAATCATGTTTGACTTCCAGAGGAACTCGACCTCTGACGATGACTCTGGCTGTGCGCTAGAGGAGTACGCCTGGGTGCCACCTGGCCTCAAACCTGAACAGGTTCATCAATACTACAGCTTTTTCCCAGAAGATAAGGTCCCTTATGTGAACAGTATTGGTGAAAAGCATCGAATCAAACAACTCCTTCAACAACTGCCACCGCATGACAACGAGGTTCGGTACTGTACCTCACTGGATGAAGAAGAAAAGCGGGAATTAAAGATCTTCAGTAACCAGCGAAAGAGAGACAATCTAGGCAGAGGCACCGTCCGACCTCTACCCCTCACTATAACTGGAGCTATATGTGAACAGTGCGGAGACCAGATCAACGGTGGCGATATCGCAGTGTTTGCCTCACGGGTTGGCCATGGCCTGTGTTGGCACCCGCACTGTTTCGTGTGCTGCATGTGTTCCGAGCTATTGGTAGATCTCATCTACTTCCACCTGGATGGCAAGATCTACTGTGGCCGCCACCATGCTGAACGACTTAAGCCACGTTGCTCAGCATGTGATGAGATTATCTTTGCAGATGAGTGCACAGAAGCAGAAGGGCAGCACTGGCACATGAAGCATTTCTGCTGTTATGAGTGTGAGGCCCCACTAGGTGGTCAGCGGTACATCATGCGTGAGGGTCATCCTCACTGCTGCAACTGCTTTGAGTCACTTTATGCAGAATACTGTGACTCTTGTGGAGAGCACATAGCTCTGGTGGTCCTGGAGCATAAAGCACCGCTGTATGAGATTCCATCCACGAAAGCCATCTTGAGCCAAGGGGATGAGCCTGACCTGTCAGACTCCTCAGACTCTGCATTCCAGAGTGCCCGTTCCCGACAGTCACGCCACAGTGCTCAGATTGGCAAGGATGGGACAAAAGGGAAGGGTGAAGGTGGACGACAAACATCATCTGGCCCTACACAGTTAGCTGGTGATGTAGAGCCTCTAGCTGTTCAAATGGATTTGCTGAGCATCTCAAGCCCAGCTCCCAGCCGTACACCCCATCGCACACCAACGAGAACCCCAAGTAGAACCCAAAGTCGGTCTCCAAGTCTGAATCGTGAGCAGCCAGTTTGGGTAAACAGGGATGAGCCTTACTCTTATGAGTCTCAACAAAGAGATTCCTCCACATCTCCAAATCCCCATCAGCTACGAAGCCAATGTAGCATTCGTACCGCTTACCCTCCTTCTCCCAATCAGCCACCCAAGATAGTGAGCAGTCAAGAGTCTTGGTCCAGAGAACCATCTGGGGGTAATTCCAAAAAGCCTCCGGTCATGGCTGCTCTGAGGGGGCACTCTTTCAATGAAAACTGGATGCACCATGGCCAGGAACCTGAATTTCATGCTCCTAAGCTCAAAACACAAATGAGCTTTAATGAGGTGTCAAGCCGTAATTCTGGATTTTTGGACAAGCGCAGTATCAGTGTGCAAGGTTTCCCCCGAGAGATGCGTCCCCCATTGCTGAGGAGCAGGCACCAATTTGGGCCAAGCTTTGGAGAACTTACGCCACTAGAACAAACACCAAGAGGTTCTGCTGACTCACTGGCCCTTTCATACACTACAGCAGGAAACTCTTTAGATGGGACCAACAGGCGTCAGGAGCACTTCTCTCGATTTTCTATGCCTGACCTGAGTAAAGACTCTGGGGTAAATGTGTCTGATAAAGGCACCATGGGTACTTTAAACTCATCAATGCAGTTCCGCAGCACTGAATCCCTGAGCTCTGTCCCAAGACCCCTTGCTGATATTGGCATGCCTGTCCGAGTAAGGTACCCTCCTCCACTATACTGGGATTCACCCAGAGGGCTAAGTTTTGAGGATCCAGTCAAAGGTCGCATTGGTCTTGCAGGAAGTATGTCCTGTATGCAAGAAGGCAATGCCCAAGCAATGACACCACGGCCAAGACGTCCTCAAACTCAAGAATCTCCCAGACAGCAGCGTCAGCGCCAACGTCACCACCACAAAAGTCACAAAGGTCACAAATATCACTATCGCTCCCGCCGCTCTCGGTCAGACAACGCCCTACATTTAGCTACAGAAAATCAGAGTTTCCCTGGGGACCCCATTCATAGATTTCACAATGACTTTGAGCGACCATCCTCATCAAGAATGTCACACAATCTCTTTGGAGCAAATTATGGGTATCAACAACAGTTCTTTAGGCCGTGCCCTCGAACCACATCGGACCTCACCTTGCAGGATCCTGGAGGTCCACAAATTAGACAGTATATGGGTAGGTATGGAGAAACAGCTGAGGATGAAGATCAGTTTTGCTCAACCTGTTCCTCTTCTTCAGAGGTGTCTGATGATGACGGTTACCTTATGGGTGATGTCATTCCACGGCCAGTGCAGCTCAGATACTTTGACAATGAGGAATTGCGACATCGTTATAGTCCTACATTGACGGGTGGTCACACCCAGCTACATACACGCAAACGGCGAAAGAGCAAGAACTGCATCATATCATAAGCAAATGGTAATGTGAGTATCTGAGTGTGTGTATGTGAGAGTGGGTGAAGTGAGTAGACCCCTGTACATCATCATTTAAATGTCAATGATTCAAAATTCTGTCACCTCGCAGTAATTGTGTTACTTGTTAAGTTGAACATAAGGGTATTTCCTCTTGGGTAATATTAACCCTTTAGATTGACTATTTTAAACATACAGGCTCCACAGTAGGAACTCGATGAAAGTAAA

Function

symbol description
prickle2a Predicted to enable zinc ion binding activity. Orthologous to human PRICKLE2 (prickle planar cell polarity protein 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00071592_00091705.mRNA True 4629 mRNA 0.43 8 71364 93571

Neighbor

gene id symbol gene type direction distance location
CI01000050_00160246_00185242 NA coding upstream 65757 159328 ~ 185342 (-)
CI01000050_00219042_00231878 NA coding upstream 125254 218825 ~ 231878 (-)
CI01000050_00272347_00273047 NA coding upstream 177370 270941 ~ 273941 (-)
CI01000050_00278324_00281820 NA coding upstream 184560 278131 ~ 281820 (-)
CI01000050_00286164_00294317 NA coding upstream 191687 285258 ~ 294317 (-)
G213201 NA non-coding upstream 26076 119647 ~ 130806 (-)
G213188 NA non-coding upstream 111537 205108 ~ 246156 (-)
G213256 NA non-coding upstream 146092 239663 ~ 239925 (-)
G213260 NA non-coding upstream 155874 249445 ~ 249737 (-)
G213176 NA non-coding upstream 168559 262130 ~ 267447 (-)
G213171 NA other downstream 53383 16080 ~ 17981 (-)
G213174 NA other upstream 141980 235551 ~ 253062 (-)
G213429 NA other upstream 735771 829342 ~ 829802 (-)
G213497 NA other upstream 889907 983478 ~ 996539 (-)
G213704 NA other upstream 1219412 1312983 ~ 1317106 (-)
CI01000050_02230904_02233429 NA other upstream 2139077 2228865 ~ 2233429 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location