CI01000050_00662789_00668402 (NINJ1)


Basic Information

Item Value
gene id CI01000050_00662789_00668402
gene name NINJ1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 661076 ~ 668402 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00662789_00668402.mRNA
GCTTCTCACAGTCTGGGTCTGTCACCTGCCCCTCTGAACATGAACCATTATGCCAATAAGAAGAGTGCGGCGGAGAGCATGCTGGATGTGGCCCTGCTGATGGCTAACGCGTCGCAGCTGAAGGCCGTGCTGGAGCAGGGGCCCGAATTCACCCTGTACACGTCCCTCATCACGCTCATCAGCCTGTCGCTCTGTCTGCAAGTGTTAGTGGGGATCTTGCTCATCTTCATAGTGAAGTGGAACCTGAACGATGAGCAGAAACATCTCCGGCTGAATGTCTTAGAGAACATCACAACAGGCTGTATCTTCATCATCGTTGTCATTAACGTCTTCATCACTGCGTTTGGAGTTCAGCGGCCCAATCCAGGCGTGTGACAGTAGCTCAAACACTGGTATATTACAGAATACACACACAAAACAGACCAACACTGAAATGTAAAGTCTTGTAAAGTGAGGAGTGTTTCTCCAATCACATTTATGAACTTTGCAGCATGTCATTATTGTATGATCTCATGAATAATTGTAACCACAGTTATAATACATTAAAATACTTATTTTTTCATTGAACACACCTTAATGCATTAAAGGTACAATATGTAAGAATTTTGCAGTAAAATATCCAAAAACCACTAGGCCAGTGTTATATATTTTGTTCACTTGTGTTTCCAACTATTTGTAAATCGTGAGAAAATTGCAATTTTAACCAAGGCTCCGGGACGTGTGAGGAGTCGCCTGTCAATTGCGTCATACCCGCGTTACCCTCGGTTTCCGGTTTTATTTTGTAGAAACCATGGAAACACCAAAGATGCTTTAATATATTACATGTTTTAATAGACAAGGGAACAACTGTTTTGATATGTTTATAGACAGAATACTAATTATTGTTATATAGCTCAACACGTTTAGTCTTATTGTTTAAATCTAATTTTCTTGATTTTTTTTGCGAGTACCATGCTTTACCATGCCTCAGAGAAAAACACTATTTTGTGAAGTAGCTAACATAGCATAATCAGATGCAGCTTTATTTTTAGTAACAGTAATACAGCATTTTCTCCATCATACAATACGTTTTAAAATTAATTTCATGCCATTTATCAACACAAGCCATCCAGAATTTAATCTGATATTGTAAAATCGATCTATCTTACTGCAGTGTGTAACAGTGTCTCACAGCAGCCGCCGAGCGAACGCACAGAGTAACGTTATAACATCATTTTCAACACACTCAAATGTATCTAATATGATAAACAGAGCTGCGTTACCTCATACTCATGACCGGAAAAGCGGAAGCGGCGCCGGCGACCGTGTCATAATAAAAGTCCCGCTGCTCGTGAGGCGTGTGTTGCGCAATCGCTCCAGCGGCCTCGTTCAGCTCCCACAACACTCGGTCCTGCTCTGCTTCATACTACAGTAACGTTAATAATCATCCATGAACATGATTTCTGGGCGAGTCCTATCCCGATTCTTTCCACCGGCTGCGAGGTGAAGACCACATGTCCCAAGATTCCACACTCAAACTTGGCGTCATCAAGCTACGCCTTTGTTTTGAAGCGACCTCTAGTGACCTCTAGTGGACAGAAAATATTACATATTGCACCTTTAAAACGCATGACAAACAACCAGTTTCAAGATGGAACAAGGAATCTGCAAATATTATAATACATTTTAACTGTTTACAATTATTTATGAAAAGATGTAATGCAATAGAATACCTTAATAAATGCTTTAAGTAAAGTGTTACAAAATTTGTTTATGAAATCAATTAAAAAAACAGATAAGAGTCATTTGTCCCAATGCTGCAACTTACAATGTATTTCAACCAATTATTATATTTCATGATGCTGTTTTCAAGGCAGCGAATTAAGTAGTTTTAAAAGCACTCCAGACAACTTTTTAAAAGTTAAAAGTGACTGATTATATCACAATTGATCATAGTCCAGAACACAGGCCTGTCATGATATCTTGTGCTGTATTCACTGCTCTTTTACTCACTTTTGTGATTATTCAGCTTGACAATAATTAAATGAACTGGAATTCAATTAAAGTGTTTGACATTCATCATTGACACTGTGTTTTATATGGAATAAA
>TU242036
TTTAGTCTTATTGTTTAAATCTAATTTTCTTGATTTTTTTTGCGAGTACCATGCTTTACCATGCCTCAGAGAAAAACACTATTTTGTGAAGTAGCTAACATAGCATAATCAGATGCAGCTTTATTTTTAGTAACAGTAATACAGCATTTTCTCCATCATACAATACGTTTTAAAATTAATTTCATGCCATTTATCAACACAAGCCATCCAGAATTTAATCTGATATTGTAAAATCGATCTATCTTACTGCAGTGTGTAACAGTGTCTCACAGCAGCCGCCGAGCGAACGCACAGAGTAACGTTATAACATCATTTTCAACACACTCAAATGTATCTAATATGATAAACAGAGCTGCGTTACCTCATACTCATGACCGGAAAAGCGGAAGCGGCGCCGGCGACCGTGTCATAATAAAAGTCCCGCTGCTCGTGAGGCGTGTGTTGCGCAATCGCTCCAGCGGCCTCGTTCAGCTCCCACAACACTCGGTCCTGCTCTGCTTCATACTACAGTAACGTTAATAATCATCCATGAACATGATTTCTGGGCGAGTCCTATCCCGATTCTTTCCACCGGCTGCGAGGTGAAGACCACATGTCCCAAGATTCCACACTCAAACTTGGCGTCATCAAGCTACGCCTTTGTTTTGAAGCGAC
>TU242033
GAGAAAAACACTATTTTGTGAAGTAGCTAACATAGCATAATCAGATGCAGCTTTATTTTTAGTAACAGTAATACAGCATTTTCTCCATCATACAATACGTTTTAAAATTAATTTCATGCCATTTATCAACACAAGCCATCCAGAATTTAATCTGATATTGTAAAATCGATCTATCTTACTGCAGTGTGTAACAGTGTCTCACAGCAGCCGC
>TU242035
TTTAGTCTTATTGTTTAAATCTAATTTTCTTGATTTTTTTTGCGAGTACCATGCTTTACCATGCCTCAGAGAAAAACACTATTTTGTGAAGTAGCTAACATAGCATAATCAGATGCAGCTTTATTTTTAGTAACAGTAATACAGCATTTTCTCCATCATACAATACGTTTTAAAATTAATTTCATGCCATTTATCAACACAAGCCATCCAGAATTTAATCTGATATTGTAAAATCGATCTATCTTACTGCAGTGTGTAACAGTGTCTCACAGCAGCCGC

Function

symbol description
ninj1 Acts upstream of or within heart development and skeletal muscle tissue development. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NINJ1 (ninjurin 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00662789_00668402.mRNA False 2088 mRNA 0.39 2 661076 668402
TU242036 False 654 lncRNA 0.42 1 661609 662262
TU242033 False 211 lncRNA 0.33 1 661984 662194
TU242035 True 279 lncRNA 0.32 1 661984 662262

Neighbor

gene id symbol gene type direction distance location
CI01000050_00560254_00585128 BRPF1 coding downstream 74764 559983 ~ 586312 (-)
CI01000050_00552377_00552664 NA coding downstream 108215 551489 ~ 552861 (-)
CI01000050_00468156_00477480 CRELD1 coding downstream 183596 467368 ~ 477480 (-)
CI01000050_00362015_00370409 TMCC1 coding downstream 290667 360400 ~ 370409 (-)
CI01000050_00286164_00294317 NA coding downstream 366759 285258 ~ 294317 (-)
CI01000050_00675537_00675797 NA coding upstream 6558 674960 ~ 676172 (-)
CI01000050_00786890_00789088 NA coding upstream 118232 786634 ~ 789088 (-)
CI01000050_00793175_00797131 NA coding upstream 124673 793075 ~ 798370 (-)
CI01000050_00849460_00849759 NA coding upstream 180614 849016 ~ 850294 (-)
CI01000050_01118519_01162499 CACNA2D3A coding upstream 450117 1118519 ~ 1162499 (-)
G213207 NA non-coding downstream 6498 650908 ~ 654578 (-)
G213357 NA non-coding downstream 13788 647077 ~ 647288 (-)
G213354 NA non-coding downstream 18703 642157 ~ 642373 (-)
G213316 NA non-coding downstream 22444 630047 ~ 638632 (-)
G213313 NA non-coding downstream 38965 617715 ~ 622111 (-)
G213363 NA non-coding upstream 1912 670314 ~ 670527 (-)
G213365 NA non-coding upstream 3139 671541 ~ 671833 (-)
G213391 NA non-coding upstream 48480 716882 ~ 718297 (-)
G213395 NA non-coding upstream 77556 745958 ~ 746612 (-)
G213397 NA non-coding upstream 80109 748511 ~ 748716 (-)
G213174 NA other downstream 408014 235551 ~ 253062 (-)
G213171 NA other downstream 643095 16080 ~ 17981 (-)
G213429 NA other upstream 160940 829342 ~ 829802 (-)
G213497 NA other upstream 315076 983478 ~ 996539 (-)
G213704 NA other upstream 644581 1312983 ~ 1317106 (-)
CI01000050_02230904_02233429 NA other upstream 1564246 2228865 ~ 2233429 (-)
G213948 NA other upstream 1660111 2328513 ~ 2331316 (-)

Expression


Co-expression Network