CI01000050_00793175_00797131


Basic Information

Item Value
gene id CI01000050_00793175_00797131
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 793075 ~ 798370 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00793175_00797131.mRNA
ATGTTTTAATTTTTCTTCATTTTTCTCCATAGACGTACATCTTCCTGCCAATTCATTACAGTGCACATTCTTACGAAATCAAAACTTTTGTGGCCTTCAATATAGTTGACAATCTTTTAGCGCATATACACTTATAGTCTCGTTTCCTGGCAAAAATGATGGATCTTGCAAATTTGTGTCCATTACAATCCTCTCTACAGCTGAATTATAAATACTACCTGTCACCAACAAGCAGCAGATGCATTGTCTTTAGTTGAGTTGGTTTACTTGTACTTTATTTTCATCTTGCAAAGAAAGTGGCTATAATTCATTCACTGCTGACTTGAAATTGCTTGTCTTCACTGCTTTCAATCATGGTTTTAAAAAAAGCACCCTTTGATATGCCCCGCCCCTACTTCCTGTGAAGTACGTCAACACAGGAAACCATTTCATGAGCTTTTTGTTGTTGATGATTTGCTAGGATGATTACGTCAGCAAGTTGTCTACTTTGTTGATACCTTGAGAAAATAAACTCCCGGAATAAAATATGTACAACTGTAGCTCAAATCTGAATCCAAAACTACTATATATTCACAAAGAAAACACCTATTTTACATTGTTATAATATTTCACAATTTTACTGTATTTCTTATTAAAAACAGTAAATACAGCCTTGCTGAGATTTCTTTCAGAAACGTGATTATTCTACACTTTTGACCACCAGTGTAGATAAAATTGCTCAGTTAAAAAGGTAATTGTGTTGTGTTTACGTGACTAAACCAAATGTTCTATCTTGTACAACCCTAATAAAACCTCAATAGCAGATTTTGAATCAATGTCTGTGTTATAAGGGTGATCAGTTTGGGGTTTTAAACTAAGAATTTTTAATATTTACCACTTGTGAAACTAATGTACTACTGTAATTTAGTGTAATTTATAGAGCAGTATCTCACCAATGCTTTGCCTGCACTGTCCTGTAAAGAGCAAGAAGTAATTGGCTTACATCAGACAAAAAGAGAAGCCCGACAAGTCTGACTTAACAACTGAAGCGAACTTTACTCTGACTGCACTGACTAATCAGTACAAGATGTGTTCCTGGCTTAACGAAGCATTTATTCGAGCAAATCGCACTTTAAAGCACCTCACAAGTGGAGTTATCACTCTTTCAGGAGCAAACGTGGCACAGACCTTCATGGAAAATCCTGCTCACAGATCAATCTAATCTAATCTGAGATTTTTTTGTCCAAGGAAGAAGCTCTCATGTCTGGTGTTTTAATCATTGGGATTCATAAAGACGCCCGCTCCCATGTGCTTCACCTTTCCAGAAATAAACGCTACACGCTCACTCCAGAGAAACTTAAGTGGGACAAATTCAAGCTGACCTACAAACTGCTGTCATTTCCTAGGAATCTTTTGAATGCCAGTGACACGAGGAGAGGGATGTCCAAGGCCTTCTCCATGTGGAGCGATGTCTCGCCCTTCAGTTTTCGTGAGGTCCCTTCCGATCAAGAGGCTGACATCAAAATCGGAGTGTGGCTGACAGATCTAGTTCACGTGGCGGCTCATGAGATCGGTCATGTACTGGGATTGATGCATTCCCAGAATCCCAAGGCTTTAATGCACCTCAATGCCACACTGACGGGCCGCAAACTAATTACTCAAGATGAGGTCTGGGGCTTACATCGACTCTATGGATGTTTGGATCGATTATTTATCTGTCCTGCTTGGGCTAGGAAGGGTTATTGTGACAGCAAGAGGAGGCTCATGCAGAAACACTGTCCTTCCAGCTGTGACTTCTGTTACGTTAGCAAAGAAACAGTGGTGCTGGAAAAGGTTTGCTTGACAGATGCTATAGATGGGAATCAAACCCTGGACTTCCAGACTGGGTGGTGCTTAATGATTCAAGGGTACTCAACCATCTCAGAAACTGGCTGACACACAAGATATATTCAAGAGTGAACAAAGCCGGATTGTCTAAACAGAACATAAATTGAGAAAACACAAGTGAAAACAATCATCATGATTTGCAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00793175_00797131.mRNA True 2014 mRNA 0.39 5 793075 798370

Neighbor

gene id symbol gene type direction distance location
CI01000050_00786890_00789088 NA coding downstream 3987 786634 ~ 789088 (-)
CI01000050_00675537_00675797 NA coding downstream 116903 674960 ~ 676172 (-)
CI01000050_00662789_00668402 NINJ1 coding downstream 124673 661076 ~ 668402 (-)
CI01000050_00560254_00585128 BRPF1 coding downstream 206763 559983 ~ 586312 (-)
CI01000050_00552377_00552664 NA coding downstream 240214 551489 ~ 552861 (-)
CI01000050_00849460_00849759 NA coding upstream 50646 849016 ~ 850294 (-)
CI01000050_01118519_01162499 CACNA2D3A coding upstream 320149 1118519 ~ 1162499 (-)
CI01000050_01319798_01336147 NA coding upstream 520720 1319090 ~ 1336696 (-)
CI01000050_01447924_01453746 EXORH, RHO coding upstream 649052 1447422 ~ 1453836 (-)
CI01000050_01513337_01523389 GNB4, GNB1, GNB2, GNB1.S, OL-GB1, GNB1A, GNB1B coding upstream 714456 1512826 ~ 1523632 (-)
G213403 NA non-coding downstream 19414 772949 ~ 773661 (-)
G213405 NA non-coding downstream 24477 765645 ~ 768598 (-)
G213397 NA non-coding downstream 44359 748511 ~ 748716 (-)
G213395 NA non-coding downstream 46463 745958 ~ 746612 (-)
G213391 NA non-coding downstream 74778 716882 ~ 718297 (-)
G213427 NA non-coding upstream 29904 828274 ~ 828669 (-)
G213428 NA non-coding upstream 30379 828749 ~ 829147 (-)
G213441 NA non-coding upstream 34280 832650 ~ 833366 (-)
G213434 NA non-coding upstream 71957 870327 ~ 871656 (-)
G213431 NA non-coding upstream 101122 899492 ~ 903682 (-)
G213174 NA other downstream 540013 235551 ~ 253062 (-)
G213171 NA other downstream 775094 16080 ~ 17981 (-)
G213429 NA other upstream 30972 829342 ~ 829802 (-)
G213497 NA other upstream 185108 983478 ~ 996539 (-)
G213704 NA other upstream 514613 1312983 ~ 1317106 (-)
CI01000050_02230904_02233429 NA other upstream 1434278 2228865 ~ 2233429 (-)
G213948 NA other upstream 1530143 2328513 ~ 2331316 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036081 MMP23B coding NC_007119.7 CM002892.2 53928472 ~ 53946034 (+)