XLOC_036081 (MMP23B)


Basic Information

Item Value
gene id XLOC_036081
gene name MMP23B
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53928472 ~ 53946034 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070611
ATGTTGCGGGGAACCGGACGCTTCTCCGGGCTGCTGCTGTTTGCGCTCCTGCTGCTGGAGACCGCGGCTGTACCCGCCCGGAGACCCGAGGAAGAAGCTCTCATGTCTGGTGTTTTGATGATTGGGATTCACAAAGACGCCCGCTCCCATGTGCTTCACCTTTCCAGAAACAAACGCTACACGCTGACGCCGGAGAAACTCAAGTGGGACAATTTCAAGATGACCTACAAATTGTTGTCTTTTCCGAGGAATCTGTTGAACGCCACTGACACGAGGAGAGGGATCTCCAAGGCCTTCTCCATGTGGAGCGACGTCTCGCCCTTCAGCTTTCGCGAAGTTCCTTCTGACCAAGAGGCCGACATCAAAATCGGTTTTTACTCTGTTAACCACACGGACTGTCTGCACTCTCACCTGCACCACTGTTTCGATGGCATCACTGGAGAGCTGGCACACGCTTTCTTCCCCCAGACCGGAGAAATACACTTCGATGATGACGAGTACTGGATCCTGGGGAACATGCGCTTCAGCTGGAACAAAGgagtgTGGTTGACAGATCTGGTGCATGTTGCTGCTCATGAGATTGGCCATGTGCTGGGTTTGATGCACTCCCAGAACCCCAAGGCTTTAATGCACCTGAACGCCACGCTGACGGGCCGCAAACTCATCACTCAAGACGAGGTCTGGGGTTTACACCGACTCTACGGGTGTTTGGATCGGTTCTTCATCTGTCCTTCATGGGCCAGGAAAGGATACTGCGACAGCAAGAGGAAGCTGATGCAGAAACACTGCCCGTCCAGCTGCGACTTCTGTTACGAGTTCCCGTTTCCCACCGCACGGCCGACCACAGCGCCACCGCGGACCAAACACAAGTTTGTTGTGGAGGGGAAAAACCTCACCTTCCGCTGTGGTAAGAAGATAGCAGCCAAGAAAGGCAAAATCTActGGTATAAAGACGGCGAGCTGCTGGAGTTTTCTCACCCCGGCTACATTTCTCTGAAGGACGACCACATCACTATAGTGGCGAACGCCATCAACGAGGGCACGTACACCTGCATCGTCAAGAAGAAGAACAAAGTGCTGACCACGTACTCCTGGAGGGTACGAGTGCGCTTCTGA

Function

symbol description
mmp23b Enables metalloendopeptidase activity. Involved in proteolysis and reproduction. Located in collagen-containing extracellular matrix.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000043079

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070611 True 1116 mRNA 0.54 8 53928472 53946034

Neighbor

gene id symbol gene type direction distance location
XLOC_036080 NA coding upstream 31481 53896086 ~ 53896991 (+)
XLOC_036079 CACNA2D3 coding upstream 263361 53563949 ~ 53665111 (+)
XLOC_036078 CU638702.1 coding upstream 430170 53496201 ~ 53498302 (+)
XLOC_036077 cacna1db coding upstream 463455 53464216 ~ 53465017 (+)
XLOC_036076 cacna1db coding upstream 471770 53452681 ~ 53456702 (+)
XLOC_036082 CABZ01079663.1 coding downstream 67165 54013199 ~ 54025857 (+)
XLOC_036083 CABZ01066578.1 coding downstream 81648 54027682 ~ 54034515 (+)
XLOC_036084 magi1a coding downstream 109356 54055390 ~ 54072665 (+)
XLOC_036085 prickle2a coding downstream 135785 54081819 ~ 54105734 (+)
XLOC_036086 NA coding downstream 168002 54114036 ~ 54134106 (+)
XLOC_036070 NA non-coding upstream 776379 53143211 ~ 53152093 (+)
XLOC_036065 dre-mir-181b-2 non-coding upstream 904708 53023679 ~ 53023764 (+)
XLOC_036064 dre-mir-181a-2 non-coding upstream 904855 53023539 ~ 53023617 (+)
XLOC_036088 NA non-coding downstream 215106 54161140 ~ 54163747 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_00793175_00797131 NA coding CI01000050 null 793075 ~ 798370 (-)