XLOC_036084 (magi1a)


Basic Information

Item Value
gene id XLOC_036084
gene name magi1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54055390 ~ 54072665 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070614
atgaatgaaagtGAACGTGTCGAACTGCAGTCAGAGTcgacaaatgaaaaaataaatcacatcaaACTCTGGAGTGATCCTCCACTGCTGACACGATGGAGATGTTCACCTCGATCTGAGACTACAGGTAACTATTATGGGACACCCAAACCACCCAAGCAGGCTCTCAGCAGGACAGTGATTACCCATGATGCTCTGCAGGACCCCTCCTCTGCTTCCCAGAAGTCCCGTGAACACATGCAGAATGCAGGAGTAGAGCAGAGCGAGCTGCAGGAGGATGCAGACATGAACAACACgtttacagGAGACTGCAGCCGCGGCGCACTCAGAGAGAATGCTGCTCCCACATACACACTGAACAACAGcatggcggcggcggcggcggcggcggcggcgtcGTCGCCCATCAACAAACACCCGGCGGAGCAGGACCCGCTCGGACCCATGCCCGACCACTGGGAGATGGCCTACACCGAGAACGGGGAGATCTACTTCATagaCCACAACACAAAGACCACCTCATGGATAGACCCTCGCTGTCAGGACAAACCGCCCAAACCCCTGGAGGACTGTGAGGATGATGaagagGGCGTCCATACAGAAGAGCTGGACCATGATCTCGAACTTCCTCCGGGCTGGGAGAAGATTGATGATCCGGTGTACGGCGTCTACTATGTGGATCATATTAACCGCAAGACGCAGTACGAGAACCCGGTTCTGGAGGCGCGGAGGAAGAAGCAGCTGGACAGCCAACGCTCTCCTGAAGGCGGACGCTACATCAGAGagtGGATAGAGGAGCACTCGTCTGCCGGCGCCACCATCGGCTCCTATGTGCCCAGTCATCTGGAGACGTACAGAGACCCGCAGAGTCACTCAGCTCCACAGGCCCCGGGGCCCAAACgaggaaAGCCCTTCTTCACTCGTAACCCGGCTGAGCTGAAGGGGACGTTCATTAGCACTAAGCTGCTGAAGAGCAGACGGGGCTTCGGCTTTACTGTAGTCGGCGGAGACGAACCGGACGAGTTCTTGCAGATCAAGAGTCTAGTGCTGGACGGACCCGCCGCAGTGGACGGAAAGATGGAGACAGGTGACGTCATTGTCAGTGTGAACGACACGATCGTGTTGGGATACACTCACGCTCAGGTGGTGAAGATATTCCAGTCCATCCCCATCGGCTCCATGGTCCAGCTGGAGCTGTGTCGCGGATACCCTCTGCCCTTTGACCCCGATGACCCTAACACCAGTCTGGTGACCTCAGTGGCCATCCTGGACAAGGAGCCCATCATCGTCAACAGTCAGGAGGGCTTCGAGCCTCTGCCCGGGCTGGCGGTTCAGATGGCACCCGGCGTGGGGTCGGTGGGTGTGGCTCCGGGTCTGGAACCCGTCCCGTACAGCGCCGTGCCGGAGGACACTCTCCTGGTGACGGCGGACAGCTGCCTGGCCTACTCCAGCGATGTGGTGACCCTCGCCTCAGCCATCGCCACCCAGCCGGAGCTCATCACCGTACACATCGAGAAGGGCGACAAAGGCTTCGGCTTCACCATCGCAGACAGCCTGATTGGCGGAGGACAGAAAGTGAAGCAGATTGTGGATTACCCACGATGCCGAGGGCTGAAGGAGGGCGATATCCTGCTGGAGGTGAACAAGAGGAGCGTGCAGGGCCTGAGCCACAACCAGGTGGTGGATCTGCTCAGTAAATGCCCACGCGGAGGAGAGGTCACCATGCTGGTGCAGAGAGGGGTCCTGCAGCCCAAGAGGAGTCCCAAAATCCTGcaGTTGGAGCGTAAGGACAGTCAGGGCAGCTCTCAGCACAGTGTGTGTAGTCAccgcagcacacacacagactctcctGGCCGTCAGGAGCCCTCGGGCCCCCAGGAGCCGCCCTCCGTCCCCCCGCCACCCACCCAGCCGCTGCCCGTCCTGCCAGCCTTTGAGGGCCCCGGACCCAACGGGACGCTGCAGAGGAAGCCGGACCCCTTCAAGATCTGGGCGCAGTCCAGGAGCATGTACGAGAGCCGCTTGCCAGACTCCCAAGAACAAGACATCTTCCTTTGGAGGAAAGACACCGGCTTCGGCTTCCGGATCCTGGGGGGAAATGAACCAGGAGAACCAATCTACATCGGCCACATCGTGAAGTACGGGGCAGCGGATGAGGACGGCCGGCTGCGCTCCGGGGACGAGCTGATCTGTGTGGATGGGACGGCGGTGGTGGGAAAGTCTCATCAGCTGGTGGTGCAGCTCATGCAGCAGGCGGCCAAACAGGGCCATGTCAACCTGACTGTGCGCCGCAAGACCCCGTATGGAGGGTATAAGGGAGAGATGGACGTCCCGCCGTCCCCGGCCTCGTCTCATCACAGCAGCACGCAGGCGCCGTCTCTGACCGAGGAGAAGCGCACTCCGCAGGGCAGCCAGAACTCTCTGAACACCGTGAGCTCGGGCTCCGGCAGCACCAGTGGCATCGGCAGTGGCGGCGGCGGCGGTAGCGGTAGCACTGTAGTGGCCCCAGCCCCTGCCACCCTGCTGCCCTACGACGTGGAGATCCAGCGCGCGGAGAACGAGGGGTTCGGCTTCGTCATCGTGTCGTCTGTGTCACGGCCTGACGTGGCTACTACACTTGCCGGAAACTCCTGCGTGTCGATGCCTCATAAGATCGGACGGATCATCGAGTGCAGTCCGGCCGACCGCTGCGGGAAGCTGAAGGTGGGAGACCGAATCCTGGCGGTCAACAGCTGCTCCATCACCAACAAATCACACTCCGACATCGTCAACCTGATCAAAGAGGCGGGAAACAGCGTCACACTGCGCATCATTCCTGGAGACGAGACATCAAACGCCTCGCTGCTGACCAACGCTGAGAAGATCGCCACCAtcaccaccacacacacacagagcagcaCGGAGCCCagGAATAATAAGCCCCGGGCCGGGCAGTGTGTGTCCTACAGTCAGgacgCAGAGTTTTATTCAGTGGATCTGGAGCGCGAGAGTAAAGGCTTCGGATTCAGTCTGAGAGGAGGGAAAGAGTACAACATGGACCTGTATGTGCTGCGTCTGGCAGAGGACGGCGCCGCAGGCAGAAACGGCAAGATGAGgGTTGGAGATGAAATTCTGGAGATTAATGGAGAAAGCACAAAGAACATGAAGCATTCTCGAGCCATCGAGCTGATCAAGACGGGCGGCCGCTGGGCGAGGCTGGTGCTGAAGCGAGGAGACGGGTCCGTGCCGGAGTACGCCATGATGGCTCCTCATCTCGCTGCCTGTCTGAGGAACGATAAGCTGGGCGAGCCGTGCTTCTACCTTATGGGTCAAAACCAAGCCACGACGGCCCAAATGACAGCTACCCTCCCTCACCCAGGCCACAAAATAATTCGGAAGTGA
>TCONS_00071975
AATGACTGACTTTCAGTTAATTGAACTCCATTACAGTAAAGCACAGTAAAGCTCTACTCTTATATGTGTAAAGCTCTGACCTGTGTGAGTGTGTAATaattcagtgtttggacttatTCGAAACTTCAGATGTTTCTGATCTCGTCAGTTCATCAGTGAAGGATTCTTCTAAGACTGGCATCTTCTGAAGCGGCTCTGCTTTCCTGGCGTTCGTGTGTGTCGGTAGATCATTCTTTAGTAATGGACTTCACAACAGTGCCAACATCAGGCCcagatgcagtgtgtgtgtgcgtgactgtgtgtatgtgtgtgtgtgcgttcttGTCAGTTCTCTTGTATGGGGTCATAAAGAGTGTGTTTGTCTCCTCCCACCTGCTCCTGTACATTACCCAGGATTCTTAGCTGCTAGTATGTTCCCCCCCCTGCTGTGTACAGGAGACTGCAGCCGCGGCGCACTCAGAGAGAATGCTGCTCCCACATACACACTGAACAACAGcatggcggcggcggcggcggcggcggcggcgtcGTCGCCCATCAACAAACACCCGGCGGAGCAGGACCCGCTCGGACCCATGCCCGACCACTGGGAGATGGCCTACACCGAGAACGGGGAGATCTACTTCATagaCCACAACACAAAGACCACCTCATGGATAGACCCTCGCTGTCAGGACAAACCGCCCAAACCCCTGGAGGACTGTGAGGATGATGaagagGGCGTCCATACAGAAGAGCTGGACCATGATCTCGAACTTCCTCCGGGCTGGGAGAAGATTGATGATCCGGTGTACGGCGTCTACTATGTG
>TCONS_00071976
CCTGACGTGGCTACTACACTTGCCGGAAACTCCTGCGTGTCGATGCCTCATAAGATCGGACGGATCATCGAGTGCAGTCCGGCCGACCGCTGCGGGAAGCTGAAGGTGGGAGACCGAATCCTGGCGGTCAACAGCTGCTCCATCACCAACAAATCACACTCCGACATCGTCAACCTGATCAAAGAGGCGGGAAACAGCGTCACACTGCGCATCATTCCTGGAGACGAGACATCAAACGCCTCGCTGCTGACCAACGCTGAGAAGATCGCCACCAtcaccaccacacacacacagagcagcaCGGAGCCCagGAATAATAAGCCCCGGGCCGGGCAGTGTGTGTCCTACAGTCAGGTGAGAGCGGCTGCCGTCTGTCTTCTTCTGTGGTGTTTATGAGTGTTTACTCGTTAATAACGCTGTAACCAGGAGAACCCCGTCACTCCGCATGAGTGGAACACTGTCTTCATCATCTTCAGTTTGACCTCACTTTACTAAAAACAGCAGCACTCACGACCGGTTCCGCATCTACACACTGCTGCAGGGATAACTGTACACTACAGCAGGCAAcatctgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcaggacgCAGAGTTTTATTCAGTGGATCTGGAGCGCGAGAGTAAAGGCTTCGGATTCAGTCTGAGAGGAGGGAAAGAGTACAACATGGACCTGTATGTGCTGCGTCTGGCAGAGGACGGCGCCGCAGGCAGAAACGGCAAGATGAGgGTTGGAGATGAAATTCTGGAGATTAATGGAGAAAGCACAAAGAACATGAAGCATTCTCGAGCCATCGAGCTGATCAAGA

Function

symbol description
magi1a Predicted to be involved in signal transduction. Predicted to be active in cell-cell junction and cytoplasm. Orthologous to human MAGI1 (membrane associated guanylate kinase, WW and PDZ domain containing 1).

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005911 cell-cell junction cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-13 Predicted to be involved in signal transduction. Predicted to be active in cell-cell junction and cytoplasm. Orthologous to human MAGI1 (membrane associated guanylate kinase, WW and PDZ domain containing 1).

Ensembl:

ensembl_id ENSDARG00000070145

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070614 False 3381 mRNA 0.60 22 54055390 54072665
TCONS_00071975 False 809 lncRNA 0.52 4 54056524 54059853
TCONS_00071976 True 836 lncRNA 0.53 5 54067407 54070261

Neighbor

gene id symbol gene type direction distance location
XLOC_036083 CABZ01066578.1 coding upstream 20875 54027682 ~ 54034515 (+)
XLOC_036082 CABZ01079663.1 coding upstream 29533 54013199 ~ 54025857 (+)
XLOC_036081 MMP23B coding upstream 109356 53928472 ~ 53946034 (+)
XLOC_036080 NA coding upstream 158399 53896086 ~ 53896991 (+)
XLOC_036079 CACNA2D3 coding upstream 390279 53563949 ~ 53665111 (+)
XLOC_036085 prickle2a coding downstream 9154 54081819 ~ 54105734 (+)
XLOC_036086 NA coding downstream 41371 54114036 ~ 54134106 (+)
XLOC_036087 brpf1 coding downstream 62977 54135642 ~ 54155096 (+)
XLOC_036088 NA coding downstream 88475 54161140 ~ 54163747 (+)
XLOC_036089 FO904970.1 coding downstream 116313 54188978 ~ 54201689 (+)
XLOC_036078 CU638702.1 non-coding upstream 557088 53496201 ~ 53498302 (+)
XLOC_036070 NA non-coding upstream 903297 53143211 ~ 53152093 (+)
XLOC_036065 dre-mir-181b-2 non-coding upstream 1031626 53023679 ~ 53023764 (+)

Expression


Co-expression Network