XLOC_036085 (prickle2a)


Basic Information

Item Value
gene id XLOC_036085
gene name prickle2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54081819 ~ 54105734 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070615
gcacacgcacacacacacatgcacatacagcAGATCAGCAGAAGACAAACGGTAGGAAgagctccagctccagctccagctccagccTGCGACACAGAGGAAGACAACAACAAGGCGTAAGGACATGAAGTGCTGATATGGCTCTGGATATGGAGAGGACGGTGTCTAAAATCATGTTTGACTTCCAGAGGAACTCGACCTCTGATGACGACTCCGGCTGCGCGCTGGAAGAATACGCCTGGGTGCCGCCCGGCCTCAAACCTGAACAGGTTCATCAGTACTACAGGTTTTTCCCAGAGGATAAAGTTCCTTATGTGAACAGCATCGGGGAAAAGCATCGGATCAAGCAACTCCTTCAACAGCTGCCGCCGCATGACAACGAGGTTCGGTACTGTACCTCTCTGGATGAAGAAGAGAAGCGTGAATTAAAGATCTTCAGCAACCAAAGGAAGAGAGATAACCTAGGCAGAGGCACCGTCCGACCTTTGCCCCTCACCATAACTGGAGCCATCTGTCAACAGTGTGGGGAGCAGATTAAGGGTGGCGATATCGCAGTGTTTGCGTCACGGGTGGCTCACGGCCTGTGTTGGCATCCTCACTGCTTCGTGTGCGGCGTCTGCTCAGAGCTCCTGGTGGATCTGATCTACTTCCAGCTGGAGGGCAAGATCTACTGCGGCCGGCACCATGCTGAGCGCCTGAAGCCCCGCTGCTCCGCCTGTGACGAGATCATCTTTGCGGACGAGTGCACCGAGGCGGAGGGCCAACACTGGCACATGAAGCACTTCTGCTGCTACGAGTGCGAGGCTCCACTCGGCGGCCAGCGCTACATCATGCGTGAGGGTCACCCGCACTGCTGCAACTGCTTCGAGAACCTGTACGCCGAGTACTGCGACTCTTGCGGAGAGCACATCGGTATAGACCAAGGTCAGATGACATATGAGGGTCAACACTGGCATGCCACTGAAGATTGCTTCAGCTGTGCCCGCTGCAGTCAGTCTTTACTGGGTCGTCCCTTCTTGCCGAAACAAGGATTGATCTACTGTTCACGTCTCTGCAGCCAAGGGGATGAGGCCGAGCTGTCAGACTCCTCAGACTCTGCTTTCCAGAGTGCCCGCTCCCGACAGTCGCACCACAGTGCCTCAGTTGGCAAGGACGGGTCAAAAGGAAAGGGTGAAACTGTACGACAGACCTCCTCTGGCCCTACAACACTGTCTGGTGATGCAGAGCCTCTGGCAGTACAGATGGACTTGCTGAGCGTGGCCAGCCCAGCGCCCAGCCGCACACCCCACCGCACGCCAACCCGAACCCCCAGCAGGACCTCTAGTCGGTCTCCAAGCCTGAACCGCGAGCAGACAGTTTGGGTAAACAGGGACGAACCTTACTCCTATGAGTCTCAAAGAGATTCTTCTACATCACCAAATCCCCATCAGCTACGAAGCCAATGTAGCATCCGTACCGCATACCCTCCTTCTCCCAATCAGCCCCCGAAGATAGTGAGCAGTCAGGAAGCGTGGTCCAAAGAGCCGCCTGGAGGAAACTCCAAGAAGCCTCCAGTCATGGCCGCACTGAGGGGACACTCTTTCAATGAGAACTGGATGCATCATGGCCAGGAACCAGAGTTTCACCCTCCAAAGCTCAAAACACAAATGAGCTTCAATGAGGTTTCGAGCCGTAATTCTGGATTTTTGGACAAGCGCAGTATCAGTGTGCAGGGTTTCCCTCGAGAGATGCGTCCTCCATTGCTACGAAGCAGGCACCAATTTAGGCCGAACTTTGGAGAACTTACGCCACTCGAACAAACACCACGAGGTTCTGCTGACTCCCTGGCCCTTTCCTACACTACAGGAAACTCTTTAGATGGGACCAGCAGGCGTCAGGAGCACTTCTCTCGATTTTCTATGCCTGACCTGAGTAAAGACTCTGGAGTAAATGTTTCTGAAAAAGGCACCGTGGGCACTTTAAACTCCTCAGTGCAGTTCCGCAGTACTGAATCTCTGAGCTCTGTCCCCAGACCCCTCGCTGATATTGGCATGCCCGTTCGACTAAGGTACCCTCCTCCTCTATACTGGGATTCGCCCCGAGGTCTGAGTTTCGAGGACCCAGTCAAAGGTCGCATTGGTCTCGCAGGAAGCATGTCTTGTATGCAGGATGGGAATGCCCAAGCAATGACACCACGGCCAAGACGTGCTCAAGCACAGAACTCCCCCCGACAGCAGCGGCAGCGGCAACGGCATCACCGCAAAAACCACAAAAGTCAGAAATATCAGTACCGCTCCCGCCGCTCTCGCTCAGATAATGCCCTGCATTTAGCTACTGAAGATCAGAGTTTTCCTGGAGACCCCATTCATAGATTTCACAATGACTTCGAGCGACCGTCCTCATCAAGACTCTCGCACAACCTCTTTGGAGCTAATTATGGCTATCGGCAGCAGTTCTTCAGGCCATGCCCTCGAACCACCTCTGACCTCACTTTGCAGGATCCCGGAGGTCCACAGATTGGACAGTACATGGGTAGGTATGGAGAAGCTGTTGAAGATGAAGATCAGTTCTGCTCCACCTGTTCCTCCTCTTCAGAGGCATCAGATGATGACGCTTATCTCCCGGGCGAAGGCATTCCCCGGCCAGTGCAGCTGCGATACTTCGACAACGAGGAGTTGCGACATCGTTATAGTCCTACGCTAGTGGGAGGTCACACACAGCTACATACTCGCAAACGGCGGAAGAGCAAGAACTGCATTATATCATAAGCGGAGGGTAATGTGAGCATCTGAGTGTGTGCAGGAGAGATCGGCAGGAGTGAGTACATTCATGTACCTTATCATTCGGTGTAACATCATAAAAGATTCAGCTTGCTGTAATTACGTTATCTCTTAATATGAGCAAAAATAGATTTGCTCTTgtgttaaattaaaagtaaataccTTAAAGTTACTATAATAAATGTCCAGACTCAAGAGTAGG
>TCONS_00070616
acatgcacatacagcAGATCAGCAGAAGACAAACGGTAGGAAgagctccagctccagctccagctccagccTGCGACACAGAGGAAGACAACAACAAGGCGTAAGGACATGAAGTGCTGATATGGCTCTGGATATGGAGAGGACGGTGTCTAAAATCATGTTTGACTTCCAGAGGAACTCGACCTCTGATGACGACTCCGGCTGCGCGCTGGAAGAATACGCCTGGGTGCCGCCCGGCCTCAAACCTGAACAGGTTCATCAGTACTACAGGTTTTTCCCAGAGGCATCAGATGATGACGCTTATCTCCCGGGCGAAGGCATTCCCCGGCCAGTGCAGCTGCGATACTTCGACAACGAGGAGTTGCGACATCGTTATAGTCCTACGCTAGTGGGAGGTCACACACAGCTACATACTCGCAAACGGCGGAAGAGCAAGAACTGCATTATATCATAAGCGGAGGGTAATGTGAGCATCTGAGTGTGTGCAGGAGAGATCGGCAGGAGTGAGTACATTCATGTACCTTATCATTCGGTGTAACATCATAAAAGATTCAGCTTGCTGTAATTACGTTATCTCTTAATATGAGCAAAAATAGATTTGCTCTTgtgttaaattaaaagtaaataccTTAAAGTTACTATAATAAATGTCCAGACTCAAGAGTAGGAACTCAGTGTGAGTACACGTTCATTTCTAAGGTTCATATTCTCCATATGTTGATGGACACCTTCATTTTTGATGGCAAACACAGATAAAAGTGCTTTGCTGAATGAAGGATACGAGTCTTACTGTACATATGTCttgccatttttcttttttcgtGTTGCTGTGTCTTTCCCTTTTATAAAGGCCCAAAGGAtactaattatatttattatatttcgcATTGCCAGCATAATTTAGcttcatttataattatatacaaatttagtattttttaatgatGATTTGATGGTGTGCTCTGGATCTTTCTCATGTCTTTATGTCTCATGTTTTCCAAGCATCTGAGATTCGGAATCAACATGTCTGCCAGTATTTTGGTACATCCACAGGCACTCATCTGTAATTGTCAAATCCCCAACCTTTTATACTCTCATGCAGTCCAATATTATTACACTTCCAGTGTCCCATTCACACCATCCACAGGTTCTCACGCTGGACTctgaactaaattaatttgaTCTCAAATGATCATAGATTATAGCCGTGCTCCCAGTGATCTTTAGCTAAATTTAATCTCTCAGCTTTTGTTCCAAAGAGGTCTGTGGACACCGTTAATAGAAGTTGGTTTGAACAATGCCTTTCCCACTGTCTGAACCTCAGAGAAACTCTGATTTCCATTCCTATTCTGTTCCACCTCTGCAGCGTGTGCCTTTCTGCTTTTCAGAACTGGTAATGGTGGCGCAGGACTGTGCTGTACTCATGCCTTGATCATGGGCCTCATGTTTGTTTGATGGGGTCAGGAGTGGCAGTATTGCAGATGTTTTATGGCCTGTATTCGGCTTATTAAAAGGATTGAAAGGgaaaatactgtacatatcaacTTAGGAGAAATACTATTATCAAAAAGGTGAAGAAACCTTTATTCGCTCAACAGGGAAGAGATATTGGGCAGGGATGTACTCACTTCTGTTTTCTGCTGTTTGTATGTTTCTCAATTATCCAACTCTTGTTGACATCCTACTCGGGCATGTTTCAGTCATTACTTACGTTATAGATCACGTGTTCTGACCTGAAATCATGATTACTGTGACTGAACATTGCACAACGATCAAAGGTATTagcttatatttattttaaaagtatactAAATCTTCTCTATTGCTCAGAATATAACTTCTGTTTTGTAGAAACTTGTGCAATAACAATCGCGATACAGCTTCATTTCTGGACTATAGGTAAGAAGTGAAGACTTAGTGTGCACTTAACTTTCAGAATTAAGATATGGATTTGACCATACTCTGAAATATCTTAAAACCATTGAGTTCTTCTGTGTTGCTTTTGAAAAGAATTTTGGATTATTGTTCTGCATAAACCCTAACAGTGTATCAAAACTCTATTTGCAACCATCGTCATACCcgtttatacattttaattaactcatttatttatttattttggttttgtatACTTCTAGTCAAGGCTTCAATCCCACTTTCCCCCTTACTTTTTGGAATATTTTTGTGGCAATACGGTTTACTATAATCCCCATGCTGCTTACTGTTGGTTGTTCTGAATAGTTTCCTAATATGTGCTCTTCATAGTTTCAActtgtcattttaaaattaaacttcttaAAATGTTTATCATTTTGCTGGGCAATGTTGGTTTAAATGCAATATTCTGTCTTTTCCAAAGTCATTCAAATACCATTTACAAATAATCTCTAGAAATAAATGTTTTCCTAATGTCAAAAAATGAGATATAAAAATGATGTAGTATTGTAAAAGTTCTGTAAATATTGTCttaaatatttctatattttgtaTCTCCAGATGCATTATTTGTATCATATTGTAGAGTGTAGAAACCTGCGGTGACTGCATGTGTATCAGCCATTCATGTCTTGTATCTGAATTAAATTACTATtt
>TCONS_00071977
TTTCATGCTCTTGGATGTGCACAGGGTTTCCACGGAGACCTGTCACTGCAGAGAAGCTCCATGGCGACCAGAGCACGAGCACGGCTCACTGAAAGAGACAAAGCCAGAATCCTGCTGTTAGTTTGAATGATTAATGCGCTCACGGTCAGAGAGAGCAGAGCAACTGAAAATCCACCACACGCTTCCAGTGATGCCAAAGTCACATTCTCTGCTAAACAGTGCTCGTTTGCAAGGCGTAAGGACATGAAGTGCTGATATGGCTCTGGATATGGAGAGGACGGTGTCTAAAATCATGTTTGACTTCCAGAGGAACTCGACCTCTGATGACGACTCCGGCTGCGCGCTGGAAGAATACGCCTGGGTGCCGCCCGGCCTCAAACCTGAACAGGTAACACACACTGCTAAACCTGCCACAacatctggggcctgtttcagaaaggaggttaactgaaaactcagagtattttaaccctgaaatgcgAGAAACTCTGgtttttccgtttcaaaatggcaggtttgttaaactggagaaagcagggtaagtcaagcctgtttctgaaagagaggtaactttaactcagagtcagttactgtggtaacttactctgtgaatctaacctggtcagaagcaggttttattctctaaactcagagtttctgtcggtctcctccccttttttaaagatgaagcggtatttctcgccttagccttacgtttccacccacgtatttttatgcttattttggatacgtgcataaaaacgattgatagaaacgtcatgatgcacataactttttaaaatatgcataaaaaacgcgcataaaTGAGTAGGttaacttttattcgatagaaaatgtgcgcataaactacgatg

Function

symbol description
prickle2a Predicted to enable zinc ion binding activity. Orthologous to human PRICKLE2 (prickle planar cell polarity protein 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061110-112 Predicted to enable zinc ion binding activity. Orthologous to human PRICKLE2 (prickle planar cell polarity protein 2).

Ensembl:

ensembl_id ENSDARG00000020982

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070615 False 2961 mRNA 0.53 8 54081819 54103810
TCONS_00070616 False 2592 mRNA 0.38 4 54081835 54105734
TCONS_00071977 True 875 lncRNA 0.45 2 54091043 54094053

Neighbor

gene id symbol gene type direction distance location
XLOC_036084 magi1a coding upstream 9154 54055390 ~ 54072665 (+)
XLOC_036083 CABZ01066578.1 coding upstream 47304 54027682 ~ 54034515 (+)
XLOC_036082 CABZ01079663.1 coding upstream 55962 54013199 ~ 54025857 (+)
XLOC_036081 MMP23B coding upstream 135785 53928472 ~ 53946034 (+)
XLOC_036080 NA coding upstream 184828 53896086 ~ 53896991 (+)
XLOC_036086 NA coding downstream 8302 54114036 ~ 54134106 (+)
XLOC_036087 brpf1 coding downstream 29908 54135642 ~ 54155096 (+)
XLOC_036088 NA coding downstream 55406 54161140 ~ 54163747 (+)
XLOC_036089 FO904970.1 coding downstream 83244 54188978 ~ 54201689 (+)
XLOC_036090 creld1b coding downstream 96820 54202554 ~ 54210276 (+)
XLOC_036078 CU638702.1 non-coding upstream 583517 53496201 ~ 53498302 (+)
XLOC_036070 NA non-coding upstream 929726 53143211 ~ 53152093 (+)
XLOC_036065 dre-mir-181b-2 non-coding upstream 1058055 53023679 ~ 53023764 (+)

Expression


Co-expression Network