XLOC_036088


Basic Information

Item Value
gene id XLOC_036088
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54161140 ~ 54163747 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072316
GccttattttgattattatattcTGAAACACACTaacccctctctctccctctccctctctccccctctctccctctctccctctctctctgtctgcagGAATGGAGTGATGTTGtTGCTGATCTCCCTGAGCTGCAACTGCAGACGGTCCTCTTGGATCAGGAGGTGTGTGTTCGTGTTCGACTCTCCATCAGGCCTCTCTTGTCAAATGAAACACTGGAGATCATCTTCAATAACTCTGAGATGGGGACATCAGACACACTGACCATCAGGAGAAAAAACACACTGCTCCTGTGGAACAGCAGTGCTGGTGATCAGTTTTTTCAGCCGTACAGAACTAAACTCCAGATGAATGAAGCGAGCGCAGAGTCACAGCAGGCCTTCTGGATCCTGCGCTATAACTGTTTCTCAGCTCAGTCTGGATCTGTTGTCTCAGTCTCTGCTCACAGAAATGACCAGCCACTCATCACAGCATCCCACACCGTCCAGCACACAggtgtccatctgtctgtctgtgtgtgtgtgtgtgtgtgtttgtgtgtccttTTTCTTTAAACTGGAATGATAAACAAC
>TCONS_00072317
cctctccctctctccccctctctccctctctccctctctctctgtctgcagGAATGGAGTGATGTTGGTAAGTCGTTGCACAATCCCTCATTTCGCAATGTTTTCATTGTTTCGGCAGTCTTGAGTGTTTGACATGTCAACTGTAGATCTGTGAAAACACACGTCGTGCTctcttcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtactctgaACAGTCTCTGAGCGAGCTTCAGGTTTCAGTCAGCAGTTTCAGTGTTTAGTGCTACAGAAGAGTGTTCAGTATAATCAGGAGGAAGTTGACCTGGTGTTCAATATCTTTATGAAGAGTCTGTAATAACTGTAGTGACGAGCTGAACTATTAATACAGCTTTACAGCATCAGTGAGCTCTACAGAATAATCACACTTATTGACTTTGAGCAGAGTCGTCATCAGATATTtgagctgaactgagctgaagactCTGGATCTGCTCTACAGCTGATAATACAGTAAATGCATGTGCTTAATAAAGAGCGCAGTTTCTGCAGGACGTGTCGTTTCTCTGGTTCACTGTTACTGTAGGAGTTGGTGAGGTGCTGAGGTGTTTTCTGATGTCAGTCACTCATCAGATCTGCTGTTGTGTTTCTGTTCAGCTGATCCTGCATCAGTCACTGTGGGCTGCTCTCTCATTTACATCAGCACTGTGGATCATTTCACACTGATTCTAAACACTGCTGATATTCACTGTATCGTGGCTGCGtgtttgtgatgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaacagtTGCTGATCTCCCTGAGCTGCAACTGCAGACGGTCCTCTTGGATCAGGAGGTGTGTGTTCGTGTTCGACTCTCCATCAGGCCTCTCTGTACGTACAGCatcatatttatattcatattcatcATCTACATCACTCTTCATCTTCACTTGTTCTTCACTCTTTCATCCACCGCTCCTGTGTTCTTCTCCGTAGTGTCAAATGAAACACTGGAGATCATCTTCAATAACTCTGAGATGGGGACATCAGACACACTGACCATCAGGAGAAAAAACACACTGCTCCTGGTATGTCTGACCATAACATAACACTAACATAACcataacattaaaataacaatGACGTAACACTAACACAACAATATCATAACATAACACTAAAATAACAATGACATAACCATAACAATAACATAACACTAACATAAGAATAACATTACAATAACATCCATaacaataacataacataacactaACATAAGAATAACATTACAATAACATATCcataacattaaaataacaatGACATAACCATAACAATAACATAACCATAACAATAACATAACAtgacactaaaataaaaataactgtaacATAACACTTAACATTACAATAACATAACTATAaccataacaataacaataacactaaaataataacaataacataacaCTAACACAACACTAACATACCCATaacaataacataacataacactaACATAAGAATAACATTACAATAACATATCTATaacaataacataacataacactaACATAAGAATAACATTACAATAACATATCCATaacaataacataacataacactaACATAAGAATAACATTACAATAACATATTCATAACATATCATGACAATAACATAATCATATCATAACACTATAATAATCCTAATATAATACTAAAATAACCATTACGCTAACGCTAATCTAACACTAGCATTAGCATAGCCCAGTGTTTAGCATGGTAAAGCTGGTTCTGCCTGGTTCTGAGCCTGGATTGTAAATCTGTCACTCCTTCACAGTCACAGTTGTGTCCAGAGCTCTGCTTCATACAGTCACTCTCTCCAGCTGTTTCACTTCATGTGTGTTTGCTGGTGTGTTTGTCAAGACTGCATAAACGTCACGCTCCATCTGTTCAACATTTGCATCATATATGGGTTAGTGTTAGCTGCTCAGAGTTATTATTTAACTACAGCTGAAATCATAAAGCTCAGTCATGCTGCTGCTCCCTGGGCTGATTAATGAGCACTCCATGAGTCAGGAGCATGGTTTAACATCTCAAGATCACAATGGAACAGCAGTGCTGGTGATCAGTTTTTTCAGCCGTACAGAACTAAACTCCAGATGAATGAAGCGAGCGCAGAGTCACAGCAGGCCTTCTGGATCCTGCGCTATAACTGTTTCTCAGCTCAGTCTGGATCTGTTGTCTCAGTCTCTGCTCACAGAAATGACCAGCCACTCATCACAGCATCCCACACCGTCCAGCACACAggtgtccatctgtctgtctgtgtgtgtgtgtgtgtgtgtttgtgtgtccttTTTCTTTAAACTGGAATGATAAACAAC
>TCONS_00071983
TTCATTGTTTCGGCAGTCTTGAGTGTTTGACATGTCAACTGTAGATCTGTGAAAACACACGTCGTGCTctcttcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtactctgaACAGTCTCTGAGCGAGCTTCAGGTTTCAGTCAGCAGTTTCAGTGTTTAGTGCTACAGAAGAGTGTTCAGTATAATCAGGAGGAAGTTGACCTGGTGTTCAATATCTTTATGAAGAGTCTGTAATAACTGTAGTGACGAGCTGAACTATTAATACAGCTTTACAGCATCAGTGAGCTCTACAGAATAATCACACTTATTGACTTTGAGCAGAGTCGTCATCAGATATTtgagctgaactgagctgaagactCTGGATCTGCTCTACAGCTGATAATACAGTAAATGCATGTGCTTAATAAAGAGCGCAGTTTCTGCAGGACGTGTCGTTTCTCTGGTTCACTGTTACTGTAGGAGTTGGTGAGGTGCTGAGGTGTTTTCTGATGTCAGTCACTCATCAGATCTGCTGTTGTGTTTCTGTTCAGCTGATCCTGCATCAGTCACTGTGGGCTGCTCTCTCATTTACATCAGCACTGTGGATCATTTCACACTGATTCTAAACACTGCTGATATTCACTGTATCGTGGCTGCGtgtttgtgatgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaacagtTGCTGATCTCCCTGAGCTGCAACTGCAGACGGTCCTCTTGGATCAGGAGGTGTGTGTTCGTGTTCGACTCTCCATCAGGCCTCTCTTGTCAAATGAAACACTGGAGATCATCTTCAATAACTCTGAGATGGGGACATCAGACACACTGACCATCAGGAGAAAAAACACACTGCTCCTGTGGAACAGCAGTGCTGGTGATCAGTTTTTTCAGCCGTACAGAACTAAACTCCAGATGAATGAAGCGAGCGCAGAGTCACAGCAGGCCTTCGTAAGTgatcgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagtgttttTGACCCTGTTTCTGTCTCTCTGTCGTCCTCTAGTGGATCCTGCGCTATAACTGTTTCTCAGCTCAGTCTGGATCTGTTGTCTCAGTCTCTGCTCACAGAAATGACCAGCCACTCATCACAGCATCCCACACCGTCCAGCACACAggtgtccatctgtctgtctgtgtgtgtgtgtgtgtgtgtttgtgtgtccttTTTCTTTAAAC
>TCONS_00071982
TTCATTGTTTCGGCAGTCTTGAGTGTTTGACATGTCAACTGTAGATCTGTGAAAACACACGTCGTGCTctcttcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtactctgaACAGTCTCTGAGCGAGCTTCAGGTTTCAGTCAGCAGTTTCAGTGTTTAGTGCTACAGAAGAGTGTTCAGTATAATCAGGAGGAAGTTGACCTGGTGTTCAATATCTTTATGAAGAGTCTGTAATAACTGTAGTGACGAGCTGAACTATTAATACAGCTTTACAGCATCAGTGAGCTCTACAGAATAATCACACTTATTGACTTTGAGCAGAGTCGTCATCAGATATTtgagctgaactgagctgaagactCTGGATCTGCTCTACAGCTGATAATACAGTAAATGCATGTGCTTAATAAAGAGCGCAGTTTCTGCAGGACGTGTCGTTTCTCTGGTTCACTGTTACTGTAGGAGTTGGTGAGGTGCTGAGGTGTTTTCTGATGTCAGTCACTCATCAGATCTGCTGTTGTGTTTCTGTTCAGCTGATCCTGCATCAGTCACTGTGGGCTGCTCTCTCATTTACATCAGCACTGTGGATCATTTCACACTGATTCTAAACACTGCTGATATTCACTGTATCGTGGCTGCGtgtttgtgatgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaacagtTGCTGATCTCCCTGAGCTGCAACTGCAGACGGTCCTCTTGGATCAGGAGGTGTGTGTTCGTGTTCGACTCTCCATCAGGCCTCTCTGTACGTACAGCatcatatttatattcatattcatcATCTACATCACTCTTCATCTTCACTTGTTCTTCACTCTTTCATCCACCGCTCCTGTGTTCTTCTCCGTAGTGTCAAATGAAACACTGGAGATCATCTTCAATAACTCTGAGATGGGGACATCAGACACACTGACCATCAGGAGAAAAAACACACTGCTCCTGTGGAACAGCAGTGCTGGTGATCAGTTTTTTCAGCCGTACAGAACTAAACTCCAGATGAATGAAGCGAGCGCAGAGTCACAGCAGGCCTTCTGGATCCTGCGCTATAACTGTTTCTCAGCTCAGTCTGGATCTGTTGTCTCAGTCTCTGCTCACAGAAATGACCAGCCACTCATCACAGCATCCCACACCGTCCAGCACACAggtgtccatctgtctgtctgtgtgtgtgtgtgtgtgtgtttgtgtgtccttTTTCTTTAAAC
>TCONS_00071981
TTCATTGTTTCGGCAGTCTTGAGTGTTTGACATGTCAACTGTAGATCTGTGAAAACACACGTCGTGCTctcttcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtactctgaACAGTCTCTGAGCGAGCTTCAGGTTTCAGTCAGCAGTTTCAGTGTTTAGTGCTACAGAAGAGTGTTCAGTATAATCAGGAGGAAGTTGACCTGGTGTTCAATATCTTTATGAAGAGTCTGTAATAACTGTAGTGACGAGCTGAACTATTAATACAGCTTTACAGCATCAGTGAGCTCTACAGAATAATCACACTTATTGACTTTGAGCAGAGTCGTCATCAGATATTtgagctgaactgagctgaagactCTGGATCTGCTCTACAGCTGATAATACAGTAAATGCATGTGCTTAATAAAGAGCGCAGTTTCTGCAGGACGTGTCGTTTCTCTGGTTCACTGTTACTGTAGGAGTTGGTGAGGTGCTGAGGTGTTTTCTGATGTCAGTCACTCATCAGATCTGCTGTTGTGTTTCTGTTCAGCTGATCCTGCATCAGTCACTGTGGGCTGCTCTCTCATTTACATCAGCACTGTGGATCATTTCACACTGATTCTAAACACTGCTGATATTCACTGTATCGTGGCTGCGtgtttgtgatgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaacagtTGCTGATCTCCCTGAGCTGCAACTGCAGACGGTCCTCTTGGATCAGGAGGTGTGTGTTCGTGTTCGACTCTCCATCAGGCCTCTCTGTACGTACAGCatcatatttatattcatattcatcATCTACATCACTCTTCATCTTCACTTGTTCTTCACTCTTTCATCCACCGCTCCTGTGTTCTTCTCCGTAGTGTCAAATGAAACACTGGAGATCATCTTCAATAACTCTGAGATGGGGACATCAGACACACTGACCATCAGGAGAAAAAACACACTGCTCCTGTGGAACAGCAGTGCTGGTGATCAGTTTTTTCAGCCGTACAGAACTAAACTCCAGATGAATGAAGCGAGCGCAGAGTCACAGCAGGCCTTCGTAAGTgatcgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagtgttttTGACCCTGTTTCTGTCTCTCTGTCGTCCTCTAGTGGATCCTGCGCTATAACTGTTTCTCAGCTCAGTCTGGATCTGTTGTCTCAGTCTCTGCTCACAGAAATGACCAGCCACTCATCACAGCATCCCACACCGTCCAGCACACAggtgtccatctgtctgtctgtgtgtgtgtgtgtgtgtgtttgtgtgtccttTTTCTTTAAAC
>TCONS_00072318
GCTGATCTCCCTGAGCTGCAACTGCAGACGGTCCTCTTGGATCAGGAGTGGAACAGCAGTGCTGGTGATCAGTTTTTTCAGCCGTACAGAACTAAACTCCAGATGAATGAAGCGAGCGCAGAGTCACAGCAGGCCTTCTGGATCCTGCGCTATAACTGTTTCTCAGCTCAGTCTGGATCTGTTGTCTCAGTCTCTGCTCACAGAAATGACCAGCCACTCATCACAGCATCCCACACCGTCCAGCACACAggtgtccatctgtctgtctgtgtgtgtgtgtgtgtgtgtttgtgtgtccttTTTCTTTAAACTGGAATGATAAACAAC
>TCONS_00072319
AAATCTGTCACTCCTTCACAGTCACAGTTGTGTCCAGAGCTCTGCTTCATACAGTCACTCTCTCCAGCTGTTTCACTTCATGTGTGTTTGCTGGTGTGTTTGTCAAGACTGCATAAACGTCACGCTCCATCTGTTCAACATTTGCATCATATATGGTGGAACAGCAGTGCTGGTGATCAGTTTTTTCAGCCGTACAGAACTAAACTCCAGATGAATGAAGCGAGCGCAGAGTCACAGCAGGCCTTCTGGATCCTGCGCTATAACTGTTTCTCAGCTCAGTCTGGATCTGTTGTCTCAGTCTCTGCTCACAGAAATGACCAGCCACTCATCACAGCATCCCACACCGTCCAGCACACAggtgtccatctgtctgtctgtgtgtgtgtgtgtgtgtgtttgtgtgtccttTTTCTTTAAACTGGAATGATAAACAAC

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019395 fatty acid oxidation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072316 False 573 lncRNA 0.49 5 54161140 54163747
TCONS_00072317 False 2370 lncRNA 0.39 3 54161188 54163747
TCONS_00071983 False 1217 lncRNA 0.46 3 54161290 54163731
TCONS_00071982 False 1233 lncRNA 0.45 3 54161290 54163731
TCONS_00071981 False 1322 lncRNA 0.45 2 54161290 54163731
TCONS_00072318 False 327 lncRNA 0.50 3 54161978 54163747
TCONS_00072319 True 435 lncRNA 0.47 3 54162990 54163747

Neighbor

gene id symbol gene type direction distance location
XLOC_036087 brpf1 coding upstream 6044 54135642 ~ 54155096 (+)
XLOC_036086 NA coding upstream 27034 54114036 ~ 54134106 (+)
XLOC_036085 prickle2a coding upstream 55406 54081819 ~ 54105734 (+)
XLOC_036084 magi1a coding upstream 88475 54055390 ~ 54072665 (+)
XLOC_036083 CABZ01066578.1 coding upstream 126625 54027682 ~ 54034515 (+)
XLOC_036089 FO904970.1 coding downstream 25231 54188978 ~ 54201689 (+)
XLOC_036090 creld1b coding downstream 38807 54202554 ~ 54210276 (+)
XLOC_036091 TMCC1 coding downstream 100199 54263946 ~ 54279435 (+)
XLOC_036092 plxnd1 coding downstream 121214 54284961 ~ 54286201 (+)
XLOC_036080 NA non-coding upstream 264149 53896086 ~ 53896991 (+)
XLOC_036078 CU638702.1 non-coding upstream 662838 53496201 ~ 53498302 (+)
XLOC_036070 NA non-coding upstream 1009047 53143211 ~ 53152093 (+)

Expression


Co-expression Network