XLOC_036092 (plxnd1)


Basic Information

Item Value
gene id XLOC_036092
gene name plxnd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54284961 ~ 54286201 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070625
ATGCCTCCGTCAGCAGCGGACCGACGCTCGGCGCTCGCGCTGCTCTCCGCGCTGCTCTTAGCGGCTCTCCAGACGCGCTCGGCCGGCGCGCTGCACGTTCAACAGGCGTTCGCGACTCCAGGACGCACCAATAACTTCGCGCTGGACGCGGCGTCAGGACGCGTCTACCTGGCCGCCGTTAACAACCTGTACCAGCTGAACGCGACGCTGGCGCTGGAGGTGGAGATGCGCACGGGACCCGTGCTGGACAACCCGCTGTGCCACGCGCCACAGCTGCCGCAGGCGACCTGCGAGCACCAGAAGACGCTCACCGACAACCACAACAAGCTGCTGGCGCTGGACCGCGCGCAGGACGTGCTGCTGGCGTGCGGATCCGTGTACCAGGGCTTCTGCGAGCTGCGGCGGCTGGAGAACGTGTCCCGGCTGGCGGTGCAGTTCCCGCAGGACGGCGCCACCGTGTTCCCCAGCATGCTCAACATCGCCGCCAACCACGAGAACGCGAGCACCGTCGGCCTGGTGTTCCGCACTCACGGCGGCGCCCCGCGGCTGCTGGTGGGCGCCACATACACCGGCATGGGCACCGAGTACTTCCCCAAGAACCACAGCAAAGAGGACCTGCGCTTCGAGAACACCCCGGAGATCGCCATCCGCGCGCTGGACACGCGCGAGCTCGGCCGCCTCTTCACCTACGACATCAACCCGTCCGAGGACAACGTCTTCAAGATCAAGCAGGAGGTCAAGCAGAAGAACAAGCTGAGCTTCGTGCACGCGTTCGCGCTCGGGAACTACTCCTACATCGCCTTCAACAACGACGCGAACAGCGGGCTGAAGGAGAGCCAGCCGAACAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAAGCTAACCGAGTCGTACGCGCAGATGGGGCTCCGGTGCGGCGCCTACACCCGCCTGCTGTCCGTCAGCCCGGCGGAGCTGCGCGCGGAGACGTTCCTGTTCGCGGTGTTCGGGCGCGCGGGCGGGCGCGCGGCGGTGTGCGTGTTCCGCGTGGCCGAGGTGGAGGAGATGATCCGGCAGGGCCGCAGGAACTGCTCTCACGGGCCGAACAGCGATGTGCAGGTGCTGGACAGCGTCATCCAGGGCTCCGGGGCCGAGTGCGAGGGCAAGGGCAGCATCATGGTGAGA

Function

symbol description
plxnd1 Predicted to enable semaphorin receptor activity. Acts upstream of or within blood vessel morphogenesis and embryonic eye morphogenesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in lateral mesoderm; pharyngeal arch 3-7; vascular cord; and vasculature. Orthologous to human PLXND1 (plexin D1).

GO:

id name namespace
GO:0001763 morphogenesis of a branching structure biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0035476 angioblast cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017154 semaphorin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1828 Predicted to enable semaphorin receptor activity. Acts upstream of or within blood vessel morphogenesis and embryonic eye morphogenesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in lateral mesoderm; pharyngeal arch 3-7; vascular cord; and vasculature. Orthologous to human PLXND1 (plexin D1).

Ensembl:

ensembl_id ENSDARG00000086057

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070625 True 1194 mRNA 0.64 2 54284961 54286201

Neighbor

gene id symbol gene type direction distance location
XLOC_036091 TMCC1 coding upstream 5526 54263946 ~ 54279435 (+)
XLOC_036090 creld1b coding upstream 74685 54202554 ~ 54210276 (+)
XLOC_036089 FO904970.1 coding upstream 83272 54188978 ~ 54201689 (+)
XLOC_036088 NA coding upstream 121214 54161140 ~ 54163747 (+)
XLOC_036087 brpf1 coding upstream 129865 54135642 ~ 54155096 (+)
XLOC_036086 NA non-coding upstream 150855 54114036 ~ 54134106 (+)
XLOC_036083 CABZ01066578.1 non-coding upstream 250446 54027682 ~ 54034515 (+)
XLOC_036080 NA non-coding upstream 387970 53896086 ~ 53896991 (+)
XLOC_036078 CU638702.1 non-coding upstream 786659 53496201 ~ 53498302 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_01374628_01443035 NA coding CI01000050 null 1374279 ~ 1443180 (+)