XLOC_036089 (FO904970.1)


Basic Information

Item Value
gene id XLOC_036089
gene name FO904970.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54188978 ~ 54201689 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070621
AATCATGAGAGCCGTTACTGTGCGGATGTGCCTGTTCATTAAATGTGTgttcatttcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcagtgtgTTGAGCAGAGATGAGTGTTGTTGTCTGCTAAGGAGTCTCAGTGTGAACCCGGACGgtatccatgtgtgtgtgtgtcatgagtGTGTGGACActgctgcagctgctggtgtgtgtgtgtggcgtgtGTGGCGTCGATCAGCCGCTGGAGAAAGTGGAGCTGTCGGGAGGTCAGCAGCTCACCTGTGGTCAgGCTGTGTTCGACTGTGAAGTGCGATCAGcATCTCCGGcctgtatgtgtgagaatgagggGGTGTCTGTGAGCGGTCTGCATGTTCGGCTGGTGCAGTGTGGGGAGCAGAAGGCCTGGAGTGTGTGTTTGCAGATCCTGCTCAACGTCACAGCCAcagACACAGGTGATGAGGCCAGCGCTGATGATGAAGAGGGTGATGAAGATCTGGAGAGTGTGTTGAGcagtgccagtgtgtgtgtgtgttgctattATCCTGTACAACAACACTCCAAAACACTGCACTTCACCTTCAACCCCACCACACTGCAGGACGACAAGACAATACAGgggggGGTGTCATTAGTGGTACAGGTCCCGAAGGCGGAGTACGGCAGTCCAGTGGTGGTCGTTTCTCCAACCAACTCCACTACAGAGCTCACGATTCCTACACAAGAGGAAGCTTGTTCCAGGGGTTTAGATGCCGTCTACTGTAAAGCGCCCAGACTGTACAGCAGGTCTGCCCCCGGGGCTGGAGCGTTCCTCCTGTACGTGTCTGATGTGGAGAGATGGAGAACGCAGGAGTTTTTAGTGTGTAAGAGACACGAGCGTGACGGAGTCTGTGTGAAGCTGCCGTGGAGGAACGCCAGTCAGGAGTTTGGCGTCTCCTTCAGCTCTGTCGCCCCCTGCCTGTGCTTTGAGATTTGTAGCAGTTTTCCTCGAGTGCAGTATTGTCCGTTTATGAATGAAACAGtgTCCAGCAGGAGTGTGTCGGTGTCTCTGTCGGTCTCCTCTTCTCCTGCTGCTGTGCTGTGGAACGTCACCGCCCCCTGCAGGCTGAAGCTGGAGGTTCGACTGTGTGTGTGGGACTGGAGGAACAGCAGCTGCAgcagcgctcacacacacacacactcgcacacacaccgCTGGACCCAGACTAACCACACACACTGGcagCTACAGGGAGAGTTCCTATATGTGCAGCGTCACCCGTCACTgtgtgtgcaggttgaAGTGTCTGGACTGGGTCTTCTGGATCCAGTGTGTCCTTTTGAAGTGAGGAGGAACCACTGGAGCATCCCgctggtgctgtgtgtgtgtctgctgtgtgtaaCAATGCTGGGGGCGTATGCTGTACAGGGAACACTGAAgacacTGGTGTCCTCTGTGGATCTGCTGCTGGTCTCTCCTCCAGATGTGgacggtgtgtgtgtgcagatgtgtgTTCTGTCCTCCAGTCTGTCGGCTCTGGGCTTCAGTGTGTCTCTGGATCTGTGTAGCGGCTCTGCGCTGTGTGCTGTGGGCCCCGGCCCCTGGCTGCACGCGGCTCTGCGGCGCGGCGGGCGGGTGGTGCTGGTGGTGACCCCAGGGGCCTGCGCACGGGCAGAGGAGTGGAGCCGCGGGGCTCGGCCGGAGGAGCAGGAGCTGCTGGAGGACCGGTTCTGCTCCGAGGTGTTCGAGGCGTCGCTCAGCCGTCTGCGGGGCCGTGCCGCCGGGCCCTTCCTGCTGGTGCAGTTTGAGGGCCACTGCCCCCCACAGGCCCTGCCGGAGCTGCTCCAGGGGCTGCCGCTGTTCAGCCTGCCCCGCCAGAGTCTGGGCTTCATCACCGAGCTGACCCGAGgagccgcacacacacacacaaacacacacctcagAGCCGCTGCACGCGTACTATCAGGAGCGCTACGAGACTCcagacggacacacacacacacactgcagcacaaacacaacaacacacaccCGGACTGCTGGATCTGACCTCACGCTGGACCCCACTGAACACTCAGATCTGAAGGGCACCTCCCATGCAGAACTGACTCCTATGCGGGTTTAAgccctgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtttctcCAGCACCCTCTAATGCTCAACatgcattattttattgtttataatcagaatataagtaaattctgtcatcaatagCTGTCCATCCACATATATTGGCTGAACCTGCTTCATGGAAACCCACAGAAATATTGAGAATGCTCATTAAAAAGGTCAGATAAAGGATAAGTAGGGTCATTTGTTTTGTCTGATGGGAGTAAATGTGCTGTAAACCCGTTTACTGAATAAACTCCAGCACACactgagagccttcatgactcgAATACACACTGCTCTCCTGATCTGGCAACCCAGGTGCTGAgatataattggctaaacaggCAGTGGGTGGAGCCACAGAGGCATTCTGGCACTGTCGCTAGCCGTGCTGTTCAGATAAACGTGTGCTGTATGTTAGCTTAGCATGATTGTGGAATATCTGCACACTATGCTActgttttaccatgtttttatgctttagaagagtctaaACCTGACCGTCCCGCTGGCTCTGACCTCCGCTCCACACCTCACGCCAGTCagaaacatgctaatccatgctaaagTCATGCTGCCGACTTGATCATACATACTGGAAAAatgttaacatgctaattcatgctagaactgTGCAAACATGCTGATTCATacaagaaacatgctaacaacatgctaatccatactgAAAACACTGTTTCGCTTATGGTAAAACATGGAGAGAACTCGCCACAGCGTCCTCTGCTGGATCATTTGTGTGTTCAACACAGCCCgaggttttttgtttatttatttgatttactaaAACTGCATGTAAAGGAAATTAGGCGAAATATTAAtcacatgcaaaataaaagtttgttttgacataatatagatgtgtgtgtgtgtgtatgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttattatatataaatatatatatatatatatatatatatatatatatatgagaaacATAAAAATCCAAACTAAAAATCTTTTGCTCtgatatttacacacacacacacacacacacacacacacacacacacacacacatatatatgtatataatgagCTCGTAGACTACTGTAATTTATGATTTTGACGGCTGTAGTACATTCACAGAGGCCAGACTGACTCATGTGTGTTCTGTACAAATATGAATGAACATACGGTTAAAAATCTCTCCTGTAGTCAGTCAGTCTGGCCTCTGTGAATGTACTACAGCCTTTATAATCATACAATTACAGTAGAGTGGTTTACTGTAAATATTGCTCTTCAACATCTGTGTTCTGTACAAATATGAACAATAATGTTGGTAAAATCTCTCCTATAGTCAGTCAGTCTGGCCTCTGGGAATGTGAGCAGACATTAGAATGAGAACATCTTGATGAAATACTGTAGATATCTTTTCCCATATATTTGTGTGATGTGTACATGAAGGGAAAATGTGAGAAAATAATGTCTGGTTGGTTCAGCTGATGTGTACTGTATGCTTATGACAGAGATTTCTGCTTTATATGTACTGTATTGTTAGTGGTTGAGTAGCCTTCTACCAGCAGCAAATATCAAACCTAAAAACAACTTTGCCAAGCTATTTATATCACTGTACTACCACAGAATCAGCACAACAGATGATTAATTCACCTACTTTACTACAGTATAGCTGAGAAACACTGTACATTACTACAGTATAGCTCATGTGGCCTGATTTAGTCATAACAACTTACTTATCAACTCAATCATCgacatttatttgaaaataataggGGTGAATGTATGacattttggttaaaaaaaattgctAGTAGTGCTTCTTAATTCTTTATATGCCATATATAAACGAACAAACacactacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccatgagcCAGAGCGCTCGAGCCTTTTCATTCTGACACAGATTGATGCTGGGTGGGCGGTGACGAAACATGATCCTCAGCCTTTACTCTGGCACACGGCGGCCTGTGATTGGTGCAGCAGAATCCTCCTTTGACCCTGATTGGCTGTGGGCGCGTGAAGGCGGGGCTTGAGCGGTCAGCTGCAGCACGCACAGAATGAGCTAGAAGCGAGCCGATGATGGTGGACATCTGAAGAGGAGACCCGGAGAAGCTGCATCTGTGGAGATCCTGAGGCTGTTTAACACACGGAGGACACACCGACGAGTGAGTacagcacacaacacacacacacatatacacatacaacacaacacacacactacacCACAGAGAACACACACAAGAGAGCGGCGCCGGGGATAAACACTGTTGCGCGCGCGCGCATGTGTAATAAtgtgtgtaataatgtgtgtaATAATGGTGTGTTCGAGAGTGTTTAGTCTCGATGAATGCGTGAATAAATGAACTGCAGAATCTCCAGCATTCACTCATTGAGGCTCTGCAGACTCTGAGCATCTCTctgccctacacacacacacacacacacacacacgcacacacacacacacacacacacacacgcagcatCAGCATCAGCGCACACACCTCAACCAGGAAGAGGAACTGATGCTTCAGGCCATCGCAGGATTTAATGTGTTCATATGC
>TCONS_00071984
ATATTTCTGTCTGTGTATCTATACATCTGTCTATATgactgtctctctctgtctgtctatgttTAGGTtggtctatatatctgtctgtctctccacaCATTtgcttacacactcattcagttATCTCTCAATCCATCAGCCGACCCACACACTCCtctattcatctgtccatctctccatccagCTGTCCACCCACCCAGCATACACATACAGCAGCTTTACATAGGCAAGGCTTTGTCAAACCAACATCTACAGCCTGACATTTAAACTTTTCCTGgtttaaactgtgtgtgtgtgtgtgtgtgtgtgtaggggggGGTGTCATTAGTGGTACAGGTCCCGAAGGCGGAGTACGGCAGTCCAGTGGTGGTCGTTTCTCCAACCAACTCCACTACAGAGCTCACGATTCCTACACAAGAGGAAGCTTGTTCCAGGGGTTTAGATGCCGTCTACTGTAAAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105863

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070621 False 4844 mRNA 0.49 14 54188978 54201689
TCONS_00071984 True 460 lncRNA 0.46 2 54192901 54193492

Neighbor

gene id symbol gene type direction distance location
XLOC_036088 NA coding upstream 25231 54161140 ~ 54163747 (+)
XLOC_036087 brpf1 coding upstream 33882 54135642 ~ 54155096 (+)
XLOC_036086 NA coding upstream 54872 54114036 ~ 54134106 (+)
XLOC_036085 prickle2a coding upstream 83244 54081819 ~ 54105734 (+)
XLOC_036084 magi1a coding upstream 116313 54055390 ~ 54072665 (+)
XLOC_036090 creld1b coding downstream 865 54202554 ~ 54210276 (+)
XLOC_036091 TMCC1 coding downstream 62257 54263946 ~ 54279435 (+)
XLOC_036092 plxnd1 coding downstream 83272 54284961 ~ 54286201 (+)
XLOC_036083 CABZ01066578.1 non-coding upstream 154463 54027682 ~ 54034515 (+)
XLOC_036080 NA non-coding upstream 291987 53896086 ~ 53896991 (+)
XLOC_036078 CU638702.1 non-coding upstream 690676 53496201 ~ 53498302 (+)

Expression


Co-expression Network