XLOC_036087 (brpf1)


Basic Information

Item Value
gene id XLOC_036087
gene name brpf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54135642 ~ 54155096 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070619
AAaggatatattattataataactgaGCTCAGACCCGCGTGTTCTGAATTAAACCCGTCCCGGTGTGGATCCTCGTCCACGGAGAGATCGCCGAATCTGCCGCGGACTCTGGAGGAatgTTAGCGGGCGCTCCTGCTGATGCTGCAGTGCACTGACGGCATGGGGCTGGACTTTGACGTGAAGACTTTCTGCCACAACCTGCGGGCCACCAAACCGCCGTACGAGTGCCCGGTGGAGAGCTGCCGTAAGGTGTACAAGAGCTACAGCGGCATCGAGTACCACCTGTACCACTACGACCACGAGAACCCACCGCCACCACCGCAGGGGACGCCACAGAAGAAGCGCAAGGGCCGCCCGCCTCGAGGATCCAGCGATGGTCCTGATTCCAGCACAGGCCCCGGGGCCACCAGCGGGCAGAACACGGCTCCGAGCAGCCCTGCAGAGCGCTCCGAACGCTCGCACTCACCTGTCAGGGAGACCATGACCTACGCTGAGGCCCAGCGCATGGTGGAGATGGAGATCCGCGGGCGCGTGCACCGCGTCAGCATCTTCCAGAATCTGGACGTGGTCTCTGAGGAGGACAGCGGGGCTGAGGAGCCTCCAGGGGCCACGGGTAGTGCAGCCGCAGCCTGTAACGGAGGCGGCGAGAGCGGAGGAGGCGACAGAATGGACACAGCAAACGGGGAGAAAGGAGCGCAGAAAACAGGGAAGCACAAGAGTAAGGAGAAGAAGAAGGACAGCGGAGCACATCATCACATCAACACCTCAGGACCCGCCGTCAAACTGCCCGAGGTGGTGTTCCGAGAGCTGGATCAGGACAGACCCGACGCGCCGCCCAGACCCATGAGCTACTACAGGTACATCGATAAATCTGCGGAGGAGCTGGACGAGGAGGTGGAGTACGACATCGATGAGGAGGACTACATCTGGCTGGACATCATGAACGAGAAGCGGCGGTCTGACGGCGTGGCCCCCATCCCGCAGGAGGTGTTCGAGTATCTGATGGACCGCCTGGAGAAAGAGTCCTACTTCGAGAGCCACAATAAGGGCGACCCGAGCGCTCTGATTGACGAGGATGCGGTCTGCTGCATCTGTAACGACGGCGAGTGTCAGAACAGTAACGTGATCCTGTTCTGCGACATGTGTAACCTGGCGGTGCACCAGGAGTGTTACGGCGTGCCCTACATCCCCGAGGGCCAGTGGCTGTGCCGCCGCTGCCTGCAGTCGCCATCCAGAGCTGTCGACTGCGCACTGTGCCCTAACAAGGGTGGAGCCTTCAAGCAGACCGACGACTCGCGATGGGCGCATGTGGTGTGTGCGCTCTGGATACCGGagGTGTGTTTTGCGAATACGGTGTTCCTGGAGCCGATCGACAGCATTGAGCACATCCCGCCGGCACGCTGGAAACTAACCTGCTACATCTGTAAGCAGCGCGGCTCCGGCGCCTGCATCCAGTGCCACAAGGCGAACTGCTACACTGCCTTCCACGTCACCTGCGCTCAGCAGGCCGGCCTCTACATGAAGATGGAGCCGGTGCGGGAGACCGGAGCCAACGGCACCTCCTTCAGCGTACGCAAGACCGCCTACTGCGACATACACACACCGCCCGGCTCCGCACGCCCGCTCGGGGGAGTGGGCGGGGTCAGCGCTGACTCCTCCCACAGCGAAGCAgagccagaggaggaggaggagccgccGGCTGCTGAGGATGACGGGAAGGGCTGGAGCTCGGAGCGGGCGAAGAGAGCGAAGGCGAAGTCACGGCTGAAGATGAAGAGAGCCAGAAAGATCCTGGCGGAGCGCAGAGCGGCCGCACCCGTGCTGTCTGTGCCCTGCATACCACCACACAAgtacagc
>TCONS_00070620
ATGGGGCTGGACTTTGACGTGAAGACTTTCTGCCACAACCTGCGGGCCACCAAACCGCCGTACGAGTGCCCGGTGGAGAGCTGCCGTAAGGTGTACAAGAGCTACAGCGGCATCGAGTACCACCTGTACCACTACGACCACGAGAACCCACCGCCACCACCGCAGGGGACGCCACAGAAGAAGCGCAAGGGCCGCCCGCCTCGAGGATCCAGCGATGGTCCTGATTCCAGCACAGGCCCCGGGGCCACCAGCGGGCAGAACACGGCTCCGAGCAGCCCTGCAGAGCGCTCCGAACGCTCGCACTCACCTGTCAGGGAGACCATGACCTACGCTGAGGCCCAGCGCATGGTGGAGATGGAGATCCGCGGGCGCGTGCACCGCGTCAGCATCTTCCAGAATCTGGACGTGGTCTCTGAGGAGGACAGCGGGGCTGAGGAGCCTCCAGGGGCCACGGGTAGTGCAGCCGCAGCCTGTAACGGAGGCGGCGAGAGCGGAGGAGGCGACAGAATGGACACAGCAAACGGGGAGAAAGGAGCGCAGAAAACAGGGAAGCACAAGAGTAAGGAGAAGAAGAAGGACAGCGGAGCACATCATCACATCAACACCTCAGGACCCGCCGTCAAACTGCCCGAGGTGGTGTTCCGAGAGCTGGATCAGGACAGACCCGACGCGCCGCCCAGACCCATGAGCTACTACAGGTACATCGATAAATCTGCGGAGGAGCTGGACGAGGAGGTGGAGTACGACATCGATGAGGAGGACTACATCTGGCTGGACATCATGAACGAGAAGCGGCGGTCTGACGGCGTGGCCCCCATCCCGCAGGAGGTGTTCGAGTATCTGATGGACCGCCTGGAGAAAGAGTCCTACTTCGAGAGCCACAATAAGGGCGACCCGAGCGCTCTGATTGACGAGGATGCGGTCTGCTGCATCTGTAACGACGGCGAGTGTCAGAACAGTAACGTGATCCTGTTCTGCGACATGTGTAACCTGGCGGTGCACCAGGAGTGTTACGGCGTGCCCTACATCCCCGAGGGCCAGTGGCTGTGCCGCCGCTGCCTGCAGTCGCCATCCAGAGCTGTCGACTGCGCACTGTGCCCTAACAAGGGTGGAGCCTTCAAGCAGACCGACGACTCGCGATGGGCGCATGTGGTGTGTGCGCTCTGGATACCGGagGTGTGTTTTGCGAATACGGTGTTCCTGGAGCCGATCGACAGCATTGAGCACATCCCGCCGGCACGCTGGAAACTAACCTGCTACATCTGTAAGCAGCGCGGCTCCGGCGCCTGCATCCAGTGCCACAAGGCGAACTGCTACACTGCCTTCCACGTCACCTGCGCTCAGCAGGCCGGCCTCTACATGAAGATGGAGCCGGTGCGGGAGACCGGAGCCAACGGCACCTCCTTCAGCGTACGCAAGACCGCCTACTGCGACATACACACACCGCCCGGCTCCGCACGCCCGCTCGGGGGAGTGGGCGGGGTCAGCGCTGACTCCTCCCACAGCGAAGCAgagccagaggaggaggaggagccgccGGCTGCTGAGGATGACGGGAAGGGCTGGAGCTCGGAGCGGGCGAAGAGAGCGAAGGCGAAGTCACGGCTGAAGATGAAGAGAGCCAGAAAGATCCTGGCGGAGCGCAGAGCGGCCGCACCCGTGCTGTCTGTGCCCTGCATACCACCACACAAgtacagcagcacacacacacatgcattacacacacacacacacacactggagaatAgtcattcacatctgcagctgacAAACAGACAGACGGCCAACgcactgccctttataaataaactgcacagttgTCTATGTGGGCGGAggaatacagaaggtgtgtgtgtgcagagggACGGTGAGGAGAAACACTCGGTGCTGAAGGAGCAGCTGAAGGCGTGGCAGCGTCTCCGTCATGATCTGGAGAGAGCCAGACTGCTGGTGGAGCTGATCCGCAAGAGGGAGAAGCTAAAGAGAGAGACGATTAAGGTGCAGGAGATGGCGATGGAGATGCAGCTCACTCCACTGCTGGTGTTGCTGCGCAGAACACTGGAGCAGCTGCAGGAGAGAGACACCAACAACTTCTTCACTGAGCCCGTACCGCTGAgcgaggtacacacacacacacacacacacactgatacacacacactgaAGACTCatgtgcacagacacacacacgcccaCATACAAACATTTGTACACATTTACTTATATATACTCATACACACGCAGATGCATACATacaatgatacacacacacacacttactcactcATGTGCACAGACAtggtcgcacacacacacattcgtacacatttaattatatacacacacactcatgtacacatgcacacacacacacacacacacacatactcactatTGCACGgacaggcacacacacatacatttgtacacattcactcatgtacacacacacacacacacacacacacatactcactatTGCACGgacaggcacacacacatacatttgtacacattcactcatgtacacacacacacacacacacacacacacacagatgcttaCATAAActgatacatacacacactcatgctcACATGCCTACGCACCTTCATATGCACAGACacacgcaaacaaacacacacaaactgatgGAGCGCGGAGCCACCATACACCACAGCACTGGAGGAGCCCGGCACGAGGAGGGAGAGAGCAGCGGCCACCAGATCAAAgatCTGAGCTCCTCTTCTTCAGCTCTGGCTCCTGAAGTGGGCCGCCGCACCTCTGTCTTGTTCTCCAAGAAGAACCCTAAAGTCTCTGGTCCCCCGAAACGCCCTGGCCGGCCCCCGAAGAACCGCGAGGTGCTGCATGGCGCTGGGGTGTTGAGCTCCAGCCCCATCGGGCCCCCGCAGCTGCCCTCACTCACAGCTTCTCGCAAGAGAACACACAGCCCCCAGTCCAGCTCCAGCTCCGAGTCCGACAGCGATCACGAACACCTCATCCTGGatctgCACAGTAATGGTTTTGGTGGAAGCGGTCAGCCGAAGACGGAGAGTTTTCTGGTGTACAGGAACGAACGCAGCCTGCCGAGATCCAGCTCCGACTCTGAGTCCACCAGCAGCAGTAGCAGCAGCGCAGCGTCTGACAGgaccagcactATGACTCGCTCCCGttggtcaatctggcaacctgcgcttgcAAGGAGAAGCAGTGAATCACACCGCTCAGTGGAAACGAGGAGCACCGAGAACGACTCGTACTCTATAGGAGGATCCAGAGGAGTGTCTCACTtggtgCGGGGCAGAGGTCGCTCTGGATGCTGGATGAGCTCAGATGATTACAGCTCTCTGGACGCTCTGGATCTGGTGTGGGCCAAATGCAGAGGATACCCATCATACCCTGCTCTGATCATCGATCCTAAGATGCCACGTGAGGGAGTGTTTCACCGCGGTGTGCCGATCCCCGTCCCGCCTCTGGAGGTGCTGAAGCTGGGAGAGCAGATGACCCAGGAGGCCCGAGAACACCTGTTCCTGGTGCTGTTCTTCGACAACAAGAGGACCTGGCAGTGGCTGCCGCGCTCTAAGCTGGTTCCTCTGGGGGTGAATCAGGATCTGGATAAGGAGAAGATGCTGGAGGGCAGGAAGTCCAACATCAGGAAGTCCGTGCAGGTGGCGTACCACCGGGCCATGCAGCACCGCAACAAGGTGCAGGGAGACCCCAGCAGCGACACCAGCGACactgactga

Function

symbol description
brpf1 Enables histone binding activity. Acts upstream of or within anterior/posterior pattern specification. Located in chromatin. Is expressed in brain; digestive system; epithelium; head; and olfactory pit. Orthologous to human BRPF1 (bromodomain and PHD finger containing 1).

GO:

id name namespace
GO:0009952 anterior/posterior pattern specification biological_process
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-731 Enables histone binding activity. Acts upstream of or within anterior/posterior pattern specification. Located in chromatin. Is expressed in brain; digestive system; epithelium; head; and olfactory pit. Orthologous to human BRPF1 (bromodomain and PHD finger containing 1).

Ensembl:

ensembl_id ENSDARG00000103665

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070619 False 1857 mRNA 0.62 5 54135642 54143148
TCONS_00070620 True 3747 mRNA 0.58 23 54137350 54155096

Neighbor

gene id symbol gene type direction distance location
XLOC_036086 NA coding upstream 1536 54114036 ~ 54134106 (+)
XLOC_036085 prickle2a coding upstream 29908 54081819 ~ 54105734 (+)
XLOC_036084 magi1a coding upstream 62977 54055390 ~ 54072665 (+)
XLOC_036083 CABZ01066578.1 coding upstream 101127 54027682 ~ 54034515 (+)
XLOC_036082 CABZ01079663.1 coding upstream 109785 54013199 ~ 54025857 (+)
XLOC_036088 NA coding downstream 6044 54161140 ~ 54163747 (+)
XLOC_036089 FO904970.1 coding downstream 33882 54188978 ~ 54201689 (+)
XLOC_036090 creld1b coding downstream 47458 54202554 ~ 54210276 (+)
XLOC_036091 TMCC1 coding downstream 108850 54263946 ~ 54279435 (+)
XLOC_036092 plxnd1 coding downstream 129865 54284961 ~ 54286201 (+)
XLOC_036080 NA non-coding upstream 238651 53896086 ~ 53896991 (+)
XLOC_036078 CU638702.1 non-coding upstream 637340 53496201 ~ 53498302 (+)
XLOC_036070 NA non-coding upstream 983549 53143211 ~ 53152093 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017343 NA misc CM030122.1 CM030122.1 54127687 ~ 54145216 (-)