XLOC_036070


Basic Information

Item Value
gene id XLOC_036070
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53143211 ~ 53152093 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072313
GAGAAGAgcctcagcagcagcagcagcatgagCAGACGAGTACAGATAATTTCTGTAAATTCATAATTTATACCAATAAATCCTATAATCATGCCGATGAAGGGCAGATTCCCCATACGGAGGACACTGGAGTATCTGCAGAAAGGAGAAATCTCCTCTGACTGAATGCTCGTCTGTTCTGTCAGTTTCTCCTCGGAGTGGACGCTCTTGAGTTTTGGCGAGTGCTCTGTGCTCCATCTCTCTCTGCTGGAGATGCTGGATCTGCTTCTGCTGGAGGTCCGTCTCGTCCGCCAGCCGCTGGGAGATCTCTATGGCTCTGCTGGTCTGCTGCGCGTCGAACTCGTCCTGGAGCTGCCGCAGGTTCTCCTCTAGCATGCACACCTCGTCTG
>TCONS_00070594
GAGAAGAgcctcagcagcagcagcagcatgagCAGACGAGTACAGATAATTTCTGTAAATTCATAATTTATACCAATAAATCCTATAATCATGCCGATGAAGGGCAGATTCCCCATACGGAGGACACTGGAGTATCTGCAGAAAGGAGAAGTGGTGTTTAAGAAGTCCGTGCGGATTATGACCGTCAATTATAACACACATGGAGACCTGAGTGAAGGAGCAAGGTCGTTTGTGTTCTTCAAAATCCCTCAGATCCAGTACAGAAACCCGTGGGTGCAGATCATGATGTTCAAGAACATGACGCCGTCTCCATTCCTGCGCTTCTACctcgatgacGGTGAGCAGGTTCTGGTGGATGTGGAGGGAAAACACTATAAAGAAATCACAGAACACGTCAAGAAGATCCTCGGCAAGACTGATGAAGTTCTGCAAGCTGAAGCTGCAGCTAAAATGGAGCTGTTCAATCCTGCAAACTTCGGGCCCAAGAAGTACTTCCTGCGGGAGTGCATGAGTGAAGTGGAGGGCCAGGTTCCACATCCCGGACGAGTCCCGCTGCCAAAAGAGATGACCGGGAAATACAAGGCCAAGATGGCGGCAACCGCAGACGAATAGAAAACAAATCTTCTTCAgtccttttgtttattttttgttgttgaactgttgtacttttgataaacatgacGTTATATTTTGAGGTTAAATGtgtgaataaaagctgttttataaACCTCAGAAAAAGAAATTTGCTTTACATTTGATCAATAGTCACATTCGTTTGGATTTCGTCCAGTGCACCTACAGTTGATTCTAATGTCTTTGCGCTCTATATTTAGGATTAAAccaactaataataatacaaaatgctCACTTCGGTGACTGATTTGAAAGTCAATCTCTGAAGTGAAAACCTCATTTTCATCATCagttttattattagtgttaCATTTATGATACCTGATATTGTTCAGTGTAAACATACATCATCATCCAGAAGCTCATGGACAGGCTCATATTAGTCACAGAGgccaacaaaacaaaagcattatAGCGGTCTAACCGAAACACTGCTTCATTTCAGAAAGCGCTTCAGATACAGTATATGTCCTTGTGTTTTTGTGGAGAATCAATAACACATGCAAGACGGAGCTTCTTTACAGAGCTGTGTGGATTATAACAAGCGCAGGTTTACTTCAACGCCACTCGGATGGTTGTGCAATCGGTAAAGTGCAACAGAAATAAACTACTCGTGGTTTAAATCACTATAGACGGAAAATAAAGTAATcggtatatacaaaataaactgacAAACACCAAAAGATTTGACACGTTCAAGAGTTATGCAATATTAAACCAGTAGTTCACCTAGAAATGAAGaactaaatcatttaaatgtaattagaatGTAGAGCACGGTTATGAATAACTGTTTGAATTCTAACAAATATCTCTTGTTGAATCACAACATTTGTGGAAAATAAAGGcgaaataatgttatttaaaacactCGATAGTTTTCCTATGGAGCCAGATGAGTCTTAAAAATAATAGATCtgtaaaaataaaactcaaacacgcacagcacaattcacaaaATCGAATTCGTTAATTCAAAATACAATTCACAAATGAGCAAATCACATTTATGATCGccgttttaaatttatgaattggatttgcgcatttatgaatggtgttttgaatttCTGAATCACGTTTTAAATTAACGAATTTAATTTGCGCTTTTATGAATGGCGTTTTGAATTAACGAATTTACcttgcgcatttatgaattgcgttttgaattaacgaattggatttgtgcatatATGAGTGGCGTTTTgaattaacaaatttaatttgcatatttataaatggcgttttgaattaacgaattggatttgtgcatttatgaatggCGTTTTGAATTAACGAATTTAACTTGAGCATTTATGAATGGCGTTTTgaattaacaaatttaatttgcGCATTTATAAATGGCgttttgaattaatgaattgtgtttgtgcatttatgaatggcgttttgaattaacaaattggatttatgcatttatgaatgtggttttgaattaatgaattggatttgtgcatttatgaatggCGTTTTAAATTAACGAATTTAATTTGCTCATTTATGAATGGCGTTTTGAattaacgaattggatttgtgcatttatgagtggcgttttgaattaacgaatttgcacatttatgaatgGCATTTTGAATTAACGAATTTGCGCAATTATGAATGgtgttttaaatgtacaaataggATTTATGCACTTAAGAAtggcatttttaatttattaattggatttgcgcatttatgaatggTGTTTTGAATTAACGAATGTAATTTGCACATTTATGATTGGCATTTTGAattaacgaattggatttgcgcattcaTGAaaggtgttttgaatttacgaattgaattttcTCATTTATGAATGgcattttgaatttactaattggattttcgcatttatgaatcgtgttttgaatttacgaattggatttgtgcatttatgaatggtgttttgaatttacgaattaaattttgtaaatgtgaattgtaaaTGTGTCTTGCATTAAATAGACTTACAACCTATATAAATTTAGTAAATTTCAATTGACGCACACTAAAGAAGTGCTATACAGACATATGGTGAGTAACAGGAATTttcatttctgagtgaactaCACTGTTTCCAAGACAAACGCAGAACATTGAAGTTTAGTATGTAGTAAAATGGTCTATCTATTAAATCAACATTAAAGCTGCGGACTCAGAAACTGATTCAGAAATACATTTAGCGTCAAAATCTGAAAATACTgactttgttaaacagaaaatgcttCAGATATTTTAACTCATTTATAGCACTCTAATAATGGAGAACTTTATTCAGATCTAAATCTGAATAATCATCAATACTAGCGCCCGCTATGCCTCTTCAAGTGTATTCAATTACAaatctaaagggatagttcactcaaaaatgacaattctctcatttattcacactcaagtgAGTCTAAACTTTTGCTGGCATccaataaattcattcattcattttcttttcacataACAATAAATTCCATAGTCCTTTTTTccaactatgaaagtcaatgtgtcaacattcttcaaaacatcttcttttcagttcaacagaagaaagaaagccataaaggtttaaaaccacttgagggaacGTGAATGAGgccatttaaatttttaaagtgAACTATCTCTTTGAAGGAACACTACACTTCTTtgtaaatatgctcattttacagctctccGAGAGTTTAGGTGttcaattttaacatttttgaatccattcagctgatcccCTGAGGTGAGCACTTATAGctcagcataaatcattaaattgcattagaccattagcatcttgtaaaaaaaaaaaaaaaaaaagaataaaaacagattattaataattttcctatttaaaggttGACTTTTATTCTgccgatctccaggtctggcaggagcacttttagctcagcttagcataaatccttgaatcaaattagaccattagcatcttgtaaaagaataaataaatcaaaacagatTTTTGATAATGTTCCTATTTAAAGCTAGACTAATTAAGCCAATCTCCAGATCCGGCtcaaacacttttagcttagcttagcataaattattgaatcggattagaccattagcatcttgttaaaaaaaaaatcaaaacagatttttgataatttttctatttaaagctcaaCTCTTATTCTGCCAATCTTCAGATGTGGCactagcacttttagcttagcttagcataaatcattgaatcagattagaccattagcatcttgtaaaaagaaaaatcaaaacagatttttgatcattttcttatttaaaacccGACTCTTATCCAGCTAATCTCCAGGTCTGTTAGTGGTActttcagcttagcttagcataaatcactgaatcagattGGACCGTTagcatcttgtaaaaaaaaaataaaaaattaaaaagtcatatttttgattttttttctatataaatCTCGACTCTTATGCAGCTGATCTCCAGATCTAGCAcaatcacttttagcttagcataaatcattgaatcggattagaccattagcatcttgctaaaaagaaaaatcaaaacagatttttgatcattttcttatttaaaactcGACTCTTATCCAGCTAATCTCCAGGTCTGTTAGTGGTACTTtcatcttagcttagcataaatcactgaatcagattGGACCGTTGGcatcttgtaaaaaaataaaaaataattaaaaagtcatattttttattttttttctatttaaatctcGACTCTTAGGCAGCTGATCTCCAGATCTGGCAcaatcacttttagcttagcataaatcattgaatcggattagaccattagcatcttgctaaaaaaaaaaatctagacagattattgatcattttcctatttaaagctcgactcttcAGCACTTACATCCTGTACTAAGACCAAAGGAAATTTAAAAGTTGATATTTAGGCTGTATGTATCATTACATACTCATATCACCgctcctgctgcagccatggtccggcagcaaagttccttgattattccGCCAGAGTGAGAGTATAGTCCCTACCTGTATTGCAACTTTGTTTTTCTTGTGTCTTAGTACACAACGTAACTACAGAAAACCATgatttaaataggaaaactatcCAAACTCTCTACTGTTTGTtagaatgagatgctaatggtctaatccgattcaatgatttatgctaagctaagctaaaagtgctccggTCAGATTCAGAGaccagctgaatggattcaaccATGGTGAAACTCAACTCTTTAACTTCgggagagtaaaaaaaaaacgagtTTATTTCCCACACAGAAGTGgaggagtgttcctttaaatcgAAGCATCAGACAAGATTCGCATCTGACGTTACGCGTTTCTACTCCGAGTGCATCGTTTTATATCAGTAACTACAAACAAGTCAAGAGTCCTCCTCTATTTCTTCCTCTTCTGCTCTCGTAGTGTTCTCTGCAGCTCCTTTAAGTTCTCCGACAGCAGCTCCACCTCATCAGAGCGTCCGCTTAGCTTAGCGTCGAATATGTACGCACGAATGTTATCGATCTGCTGCAGAAGGAGCTCTTCCTCAATGGCCgtatcatcctcatcatcctcatcaaACGGGTTGGTCGAGGATGCAGGAGTCTCATCGGAAACCTCTTTAAATGGGTTACTTcggtcatcatcatcatcatcatcatcctcaaaTGGGTTTTTAGCCGCATTAGGATCATCGTTTTCCTCCTCAAAAGGGTTGTACTCTTTCTTCCCGTTGGCAGTCTGAGAGTTTGTGGGCTCTTCCTCTACTGGAGAGAAAGGCTCCTCATCGAACGGGTTTTTGGATGGAGATTTGTTCTCCAACGAAGGAGGCGAATGCTCTTGAGTTTTGCTTGTGTCTCCTCTGAGTGAATGCTCTTGAGTTTTGCTTGCTCTGAGTGTAGGATCTTCTGCTTTGTTTGCTCTGAGAGACTGATATTGAGTTTTGTTTGCTCTGAGTGAAGGATCTTCTGCTTTGTTTGCTCTGAGAGACTGATATTGGGCTTTGTTAGCTCTGAATGGCTGCTCTTCAGCTTGGTCAGCGCCTCCTCGGCGTGTATGATCAGTTTTCTCTAGATCTCCTCTGACTGAATGCTCGTCTGTTCTGTCAGTTTCTCCTCGGAGTGGACGCTCTTGAGTTTTGGCGAGTGCTCTGTGCTCCATCTCTCTCTGCTGGAGATGCTGGATCTGCTTCTGCTGGAGGTCCGTCTCGTCCGCCAGCCGCTGGGAGATCTCTATGGCTCTGCTGGTCTGCTGCGCGTCGAACTCGTCCTGGAGCTGCCGCAGGTTCTCCTCTAGCATGCACACCTCGTCTGAGCGGTTTGCGGATCGCGCCTGTCGCAGGAAGGATTCGATGTTCTCGATCTGCTGCAGGAGCGGGTCGTCCTGCTCGGAGCGGGTGTCGGATTGAGGGAGCCAGCCGCCGGCTTTGGTCACGCGTGGAGCTGCGACGTCTCCGTTCACACTGACAGTCGGACGGTTCTTCTCATTCTCCAGTCGACGCTTGTGAGACTCTAAGCTGAC

Function

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0009056 catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0010243 response to organonitrogen compound biological_process
GO:1901698 response to nitrogen compound biological_process
GO:0036503 ERAD pathway biological_process
GO:0005737 cytoplasm cellular_component
GO:0140096 catalytic activity, acting on a protein molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050417-52 Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 50. Orthologous to human MRPS25 (mitochondrial ribosomal protein S25).

Ensembl:

ensembl_id ENSDARG00000041306

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072313 False 389 lncRNA 0.52 2 53143211 53151885
TCONS_00070594 True 6188 mRNA 0.37 4 53143211 53152093

Neighbor

gene id symbol gene type direction distance location
XLOC_036069 nr2c2 coding upstream 1143 53120278 ~ 53142068 (+)
XLOC_036068 wdr46 coding upstream 46457 53080515 ~ 53096754 (+)
XLOC_036067 nadka coding upstream 73671 53064920 ~ 53069540 (+)
XLOC_036066 nadka coding upstream 81194 53051701 ~ 53062017 (+)
XLOC_036065 dre-mir-181b-2 coding upstream 119447 53023679 ~ 53023764 (+)
XLOC_036071 cacna1db coding downstream 51924 53204017 ~ 53260670 (+)
XLOC_036072 gnb1a coding downstream 117564 53269657 ~ 53334650 (+)
XLOC_036073 BICD2 coding downstream 192633 53344726 ~ 53378098 (+)
XLOC_036074 dcp1a coding downstream 235912 53388005 ~ 53401791 (+)
XLOC_036075 cacna1db coding downstream 271315 53423408 ~ 53436880 (+)
XLOC_036061 NA non-coding upstream 114542 52997540 ~ 53028669 (+)
XLOC_036064 dre-mir-181a-2 non-coding upstream 119594 53023539 ~ 53023617 (+)
XLOC_036063 NA non-coding upstream 123731 53018176 ~ 53019480 (+)
XLOC_036062 NA non-coding upstream 125654 53017077 ~ 53017557 (+)
XLOC_036078 CU638702.1 non-coding downstream 344108 53496201 ~ 53498302 (+)
XLOC_036080 NA non-coding downstream 743993 53896086 ~ 53896991 (+)
XLOC_036083 CABZ01066578.1 non-coding downstream 875589 54027682 ~ 54034515 (+)
XLOC_036086 NA non-coding downstream 961943 54114036 ~ 54134106 (+)
XLOC_036088 NA non-coding downstream 1009047 54161140 ~ 54163747 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_01715475_01720169 MRPS25 coding CI01000050 null 1715068 ~ 1720943 (-)