XLOC_036068 (wdr46)


Basic Information

Item Value
gene id XLOC_036068
gene name wdr46
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53080515 ~ 53096754 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070591
acgctcactatacggccaatttagttgatcaattcccctatagcgcatgtgtttggactgtgggggaaaccggagcactcggaggaaacccacatcaacacggggagaacatgcaaactccacacaaaaacgtcaactgacccagccggcattcacccagcgaccttcttactgtgaggccacagtgttaaCCTGGCACACCATGCTGCCAGGTTTcttttaattaactaataaaaaacaattcttaaattaaatatgaaaatatatttaaacttatttCAACTACGTTGCCGAGTAGTAAAAGCTAAAGCTAGCTTTTAGCCATAGCGCTACTTCTCTTTTTATGTAGCTACTAAAGCTAACAAAAACACTCAATATAATTGCTAAAGCTTCAAATGAAGTGGCATAACAGTAAAACtaattcataatatttaaaataaattgatagTATGTGGATTTAGTGCAACATTTAAACATTTGCGGATCATATAAGATCAGCGGGTGTCAAGTGAATAACAGTGATCGCCATGACCGTCAGTCCAGCAGAAGGCGCTGATTCACTCTTCAGCTGTTCTGATCGCCGCCAACAATCGACGAAGAAGGACGGATTCAACGCTTTCAAACAAACATGGCGGCGCAGGAGGTGTTGACGGCTTCACACGTGGAGAAAAAGGCAAAGAAAAAGCCTGCAAAGCGCTATTGGGAAGAAACAGAAAACACAGAGCAAAACAAAGCAACCGAAGAGGAGAGTAAAGATGAGCAGAAGCAGAAACCCCACACAGAGAAGAGGAAGAAAGAAGAACGTTTACTGTCAGGGAAAGAAGACCCTTTTCCTGGAGAGAAGCCGATCCCACAGAAGCAGCTGCGCACGTTTCAGAGAGGACAGAAACACAAAGTGcctgCACGAGCCGGTCCGAAGCTGAAACATGCCATCACGTCCTCTGAGTCTCTGTCTGAACTGGCTCAGAAACAGGCTGCACGATACGGTCTCCTGCTCCCAGAGGATGCTGGgtttcTGGAAGGAGACGATGGTGAAGACACGTGCACCATCGCTCAGGACGATATTGCAGATGCTGTGGACATCACATCTGGAGCGAAGTACTTCAACCTGCATCTCTCCCAGTTTGGGCCGTATAGACTTGACTACAGCAGAACTGGACGGCACCTGTTGCTGGGCGGGAGGAGAGGTCATGTGGCCTGCTTCGACTGGCAGACCAAACACCTGATGTGTGAGATGAACGTCATGGAAACAGTTAATGACATCAAGTGGCTTCACACAGAGGCCATGTTTGCTGTGGCACAGAAGAAGTGGCTCTACATTTATGACTCGAAAGGTGTGGAGCTCCACTGCATAAAGAAGTTCAACGACGTCTTGCGGATGCAGTTCCTGCCGTACCACTTCCTGCTCGCCACAGCGAGTGCCACAGGCTTTCTGCAATACCTGGATGTGTCGATCGGTAAAGAGATCGCGGCCATCTGCACAAAATCTGGCCGTCTGAACGTGATGACGCAGAATCCCTATAACGCCATCATCCACCTGGGACACACCAACGGCACCGTCAGCCTGTGGTCGCCCAATCAGAAAGAGCCTCTGGTGAAGATGCTGTGCCATCGAGGGGCGGTTCACTCTGTAGCGGTGGACAAAACCGGCACGTATATGGTGACGTCGGGTCTGGATAGGAAGTTGAAAGTGTATGACATCAGAGCTTTCAAACCCTTCCACTCCAGTTTCCTGCCAGCGGGAGCCTCGTGTCTGTCTCTAAGTCAGAGAGGACTGCTGAGCGCCGCTACTGGAGATGTTGTACAGGTGTATCAGAACGTTTGGGGAAGCACTCCTGTGTCCAAACCCTACATGGCGCACCGTCTGCGAGGACAGGTCTGCGGAGTGGCGTACTGCCCCTTCGAGGACGTTCTTGGAATTGGACACGGCCAGGGCTTCACTAGTATGATCGTACCAgGTGCAGGAGAACCGAATTTCGACGCTCTCGATACGAACCCGTACCGCAGCGCTAAACAGAGGCAGGAGTGGGAGGTCAAGGCTCTGCTGGAGAAAGTGCAGCCCGAGCTGATCGGTCTGGATCCCGGACTGCTGAGTAAAGTGGACCAGGCCAGCTTTGAGCAGAGACACAAGGAACGGGTTGAAGTAATGGGATTTGATCCTTTGGCGAAACAGAAATTCAAGCCGCGGATGAGGAAGAAGGGAAGAAGCTCTGCAGGCGCTGTAGAGAAGAGAAAGAGGAAAGTCGCCCATGAAGATCAGAGGGATGAAATCCGACAGACTGTTGAAGAGAAGATGAAACGACAGAAAGAGCAGAAAGAGAGGAGCGACGAGAGGAAAGAGCTGGAGAAGAAATCAGCGCTGGATCGCTTTAAGAAGTGAAGATGTCTGATGTACATCGAGAACAGTGTTGCTCATCTGCCGCACACACTGGCAGATTACAGGACACGactgttttataataaaatatcctGATGTCA
>TCONS_00071974
GTGCAGGAGAACCGAATTTCGACGCTCTCGATACGAACCCGTACCGCAGCGCTAAACAGAGGCAGGAGTGGGAGGTCAAGGCTCTGCTGGAGAAAGTGCAGCCCGAGCTGATCGGTCTGGATCCCGGACTGCTGAGTAAAGTGGACCAGGCCAGCTTTGAGCAGAGACACAAGGAACGGGTTGAAGTAATGGTGAGTCGGCCTGACGCTATTAATGGGATTTGATCCTTTGGCGAAACAGAAATTCAAGCCGCGGATGAGGAAGAAGGGAAGAAGCTCTGCAGGCGC

Function

symbol description
wdr46 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and segmental plate. Orthologous to human WDR46 (WD repeat domain 46).

GO:

id name namespace
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0032040 small-subunit processome cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040426-1264 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and segmental plate. Orthologous to human WDR46 (WD repeat domain 46).

Ensembl:

ensembl_id ENSDARG00000095879

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070591 False 2478 mRNA 0.49 14 53080515 53096754
TCONS_00071974 True 287 lncRNA 0.55 2 53095004 53095533

Neighbor

gene id symbol gene type direction distance location
XLOC_036067 nadka coding upstream 10975 53064920 ~ 53069540 (+)
XLOC_036066 nadka coding upstream 18498 53051701 ~ 53062017 (+)
XLOC_036065 dre-mir-181b-2 coding upstream 56751 53023679 ~ 53023764 (+)
XLOC_036064 dre-mir-181a-2 coding upstream 56898 53023539 ~ 53023617 (+)
XLOC_036063 NA coding upstream 61035 53018176 ~ 53019480 (+)
XLOC_036069 nr2c2 coding downstream 23524 53120278 ~ 53142068 (+)
XLOC_036070 NA coding downstream 46457 53143211 ~ 53152093 (+)
XLOC_036071 cacna1db coding downstream 107263 53204017 ~ 53260670 (+)
XLOC_036072 gnb1a coding downstream 172903 53269657 ~ 53334650 (+)
XLOC_036073 BICD2 coding downstream 247972 53344726 ~ 53378098 (+)
XLOC_036061 NA non-coding upstream 51846 52997540 ~ 53028669 (+)
XLOC_036062 NA non-coding upstream 62958 53017077 ~ 53017557 (+)
XLOC_036078 CU638702.1 non-coding downstream 399447 53496201 ~ 53498302 (+)
XLOC_036080 NA non-coding downstream 799332 53896086 ~ 53896991 (+)
XLOC_036083 CABZ01066578.1 non-coding downstream 930928 54027682 ~ 54034515 (+)
XLOC_036086 NA non-coding downstream 1017282 54114036 ~ 54134106 (+)

Expression


Co-expression Network