XLOC_036073 (BICD2)


Basic Information

Item Value
gene id XLOC_036073
gene name BICD2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53344726 ~ 53378098 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070601
tagcaatagtaatagtaataataataataataataataataataataatagtaataaacagCTCATTAGTAGTTCATTAAACCAGTTGTAGTAGTGTCAGCTAATGGGTAGTTAATATCGTGATTTGCGACAAACTAAAGTGGCGTCAATAATACATTCAGCAGCTCGTATATTGAGTGTGTCTCTGTCTGTATATGaagtttttactgtgtttttctCTAATCTCTGCAATTCTTCTGTCTGTCAGGCTTTCGGACAGGCTCACTCCAACCACCGGAAGGTTGCGGCTGATGGAGAAAGCCGCGAAGAGTCGCTCATCCAGGAGTCTGCCTGCAAAGAAGCGTATTACGAGCAGCGCATGCAGGAGCTGCAGGCCGAACTCCGACAAACACGCACCATCCTGACCAACGTCCAGTCTGAGAACGAACGGCTCGCCACCATCACGCAGGAGCTCAGAGAGAACAGTCAGATGGTGGAGCTGCAGAGGTCTCGGCTGCGGGACGACATCAAGGAGTTTAAGTTCAGAGAGTGTCGCCTGCTGCAGGACTACAGCGAGCTGGAGGAGGAGAACATCACACTGCAGAAACACGTGTCTGTCCTCAAGCAGAGCCAGgttGAGTTTGAGGGTCTGAAGCATGAAATCCGGCGTCTGGAGGAGGACACTCAGTTTCTGAACAGTCAGCTCGAGGATGCCATCCGTCTGAAGGAGATCGCAGAGAGACAGCTTGGAGAAGCTCTGGAGACCATCAAGACTGAGAGAGAGCAGAAGGCGGCTCTGAGGAAGGAGTTGTCTCAGTACATGAGCATCAGTGACTCCATGTACCACAGTCCCCTGAGCATCTCTCTGGATGGCCTGAAGTTCAGCGATGACGCCTCCATCGAGCCCAACAATGACGAACCGCTGCACGTCTATGAGAACGGCTTCGAAAAAATCACAGACAACAACGACAACCGCGTCTCCACACCCAAGAAAAGCGAGCTCTTCCAGCCGTCCTCTAGTCTGGTGGACAACCTGCTGAACGAGCTGAACATCTCCGAGATCCAGAAGCTCAAACAGCAGCTGCTGCAGGTGGAGCGGGAGAAGGTGACTCTTCTGTCCACGCTGCAGGAGTCTCAGAAGCAGCTGGAGCAGGCCAACGGAGCTCTCTCTGAGGAACATGAGAAGGTCGGACGGCTCACCGAAAACCTCAACGCCATCCGAAAACTCCAGGCCAACAAAGAGCGACAGTCCGCCCTGGATAACGAGAAGGAGCGCGACAGCCATGAGGACAGCGAATACTACGAGGTGGACATCAACGGCCCCGAGATCCTCCAGTGCAAGTACAAGGTCGCCGTTTCTGAAGCGAGTCAACTAAAGGAGGAGCTCAAAACACTCAAGGCGGAGCATTCGGCCTGTCAGTCGCAGTATCAGGAGGAGCGGGCGCAGCTGGAGAGCCAGGTCGCATCTTTAAACGCACAGCTCACGTCTCTGGAGCGCAGCAGCCGGTCCGAGCGTGAGCAGCTAGCACGACTAGAGAAAGAGCTCCGACAGGCTAGCGAAGTAGCAGGGGAGTCGCAGGGCAGCCTTAACATCGCGCAAGATGAGCTAGCCACCTTTAGCGAGGAGCTAGCCAATCTGTATCACCACGTCTGCATGTGTAACAACGAAACTCCCAACCGTATCATGCTGGATTACTACCGTGAAGGTAAATCTGGTGTGAACGGGACGCAGACCAACGGTTGGTGCAGCCCTGATGGTCGCGGCCGGCGTTCTCCAATCCTGCTAACCCGCGGGCTGTTTCCTACCGCCGAATCTAGTGATGGCACCTCATCTCCCATCTCATCCATCCCATCCCCGGTGGCCGATCCACGCAAGGAGCCCATGAACATCTACAACCTAGTGGCCATCATCCGCGACCAGATCCGGCACCTTCAGCTGGCCGTAGACCGCACCACGGAGCTCTCCCGCCAGCGCATGGCCTCTCTGGAGCTGGGCCTCGGGGCTGACCGTGAGCAGGAGGCCAGCGTGGAGGAAATCCTCAAACTCAAATCTCTGCTCAGCACCAAGAGGGAGCAGATCGCCACGCTCAGAACCGTCCTGAAGGCAAACAAGCAAACTGCTGAAGTGGCTCTGGCCAACCTAAAGAGCAAATATGAGAATGAAAAGGCGATGGTGACCGAAACCATGATGAAGCTTCGCAACGAGCTCAAAGCGCTGAAGGAGGACGCAGCCACGTTCTCTTCACTCAGAGCAATGTTTGCTACCCGTTGTGACGAATACGTGACTCAACTGGACGAGATGCAGAGACAGCTAGCAGCAGCGGAGGACGAGAAGAAGACGCTTAACTCTCTGCTACGGATGGCCATCCAGCAGAAGCTAGCGCTCACGCAGCGCCTGGAGGATCTGGAGTTTGATCACGAGCAAATACGCCGGCCTGGAGCCAACGGGCGCACCAGAAACACCGCGCCGCGCATCAAATCCAGCCAAACGCACGTAAGTCGCAGTGACAGCAACGGCCACACAGTGGCGCCAGTGGTTTTCTGCAGCGAGAAATACAAGATCTACTGCGACTGA
>TCONS_00070602
tagcaatagtaatagtaataataataataataataataataataataatagtaataaacagCTCATTAGTAGTTCATTAAACCAGTTGTAGTAGTGTCAGCTAATGGGTAGTTAATATCGTGATTTGCGACAAACTAAAGTGGCGTCAATAATACATTCAGCAGCTCGTATATTGAGTGTGTCTCTGTCTGTATATGaagtttttactgtgtttttctCTAATCTCTGCAATTCTTCTGTCTGTCAGGCTTTCGGACAGGCTCACTCCAACCACCGGAAGGTTGCGGCTGATGGAGAAAGCCGCGAAGAGTCGCTCATCCAGGAGTCTGCCTGCAAAGAAGCGTATTACGAGCAGCGCATGCAGGAGCTGCAGGCCGAACTCCGACAAACACGCACCATCCTGACCAACGTCCAGTCTGAGAACGAACGGCTCGCCACCATCACGCAGGAGCTCAGAGAGAACAGTCAGATGGTGGAGCTGCAGAGGTCTCGGCTGCGGGACGACATCAAGGAGTTTAAGTTCAGAGAGTGTCGCCTGCTGCAGGACTACAGCGAGCTGGAGGAGGAGAACATCACACTGCAGAAACACGTGTCTGTCCTCAAGCAGAGCCAGgttGAGTTTGAGGGTCTGAAGCATGAAATCCGGCGTCTGGAGGAGGACACTCAGTTTCTGAACAGTCAGCTCGAGGATGCCATCCGTCTGAAGGAGATCGCAGAGAGACAGCTTGGAGAAGCTCTGGAGACCATCAAGACTGAGAGAGAGCAGAAGGCGGCTCTGAGGAAGGAGTTGTCTCAGTACATGAGCATCAGTGACTCCATGTACCACAGTCCCCTGAGCATCTCTCTGGATGGCCTGAAGTTCAGCGATGACGCCTCCATCGAGCCCAACAATGACGAACCGCTGCACGTCTATGAGAACGGCTTCGAAAAAATCACAGACAACAACGACAACCGCGTCTCCACACCCAAGAAAAGCGAGCTCTTCCAGCCGTCCTCTAGTCTGGTGGACAACCTGCTGAACGAGCTGAACATCTCCGAGATCCAGAAGCTCAAACAGCAGCTGCTGCAGGTGGAGCGGGAGAAGGTGACTCTTCTGTCCACGCTGCAGGAGTCTCAGAAGCAGCTGGAGCAGGCCAACGGAGCTCTCTCTGAGGAACATGAGAAGGTCGGACGGCTCACCGAAAACCTCAACGCCATCCGAAAACTCCAGGCCAACAAAGAGCGACAGTCCGCCCTGGATAACGAGAAGGAGCGCGACAGCCATGAGGACAGCGAATACTACGAGGTGGACATCAACGGCCCCGAGATCCTCCAGTGCAAGTACAAGGTCGCCGTTTCTGAAGCGAGTCAACTAAAGGAGGAGCTCAAAACACTCAAGGCGGAGCATTCGGCCTGTCAGTCGCAGTATCAGGAGGAGCGGGCGCAGCTGGAGAGCCAGGTCGCATCTTTAAACGCACAGCTCACGTCTCTGGAGCGCAGCAGCCGGTCCGAGCGTGAGCAGCTAGCACGACTAGAGAAAGAGCTCCGACAGGCTAGCGAAGTAGCAGGGGAGTCGCAGGGCAGCCTTAACATCGCGCAAGATGAGCTAGCCACCTTTAGCGAGGAGCTAGCCAATCTGTATCACCACGTCTGCATGTGTAACAACGAAACTCCCAACCGTATCATGCTGGATTACTACCGTGAAGGTAAATCTGGTGTGAACGGGACGCAGACCAACGGTTGGTGCAGCCCTGATGGTCGCGGCCGGCGTTCTCCAATCCTGCTAACCCGCGGGCTGTTTCCTACCGCCGAATCTAGTGATGGCACCTCATCTCCCATCTCATCCATCCCATCCCCGGTGGCCGATCCACGCAAGGAGCCCATGAACATCTACAACCTAGTGGCCATCATCCGCGACCAGATCCGGCACCTTCAGCTGGCCGTAGACCGCACCACGGAGCTCTCCCGCCAGCGCATGGCCTCTCTGGAGCTGGGCCTCGGGGCTGACCGTGAGCAGGAGGCCAGCGTGGAGGAAATCCTCAAACTCAAATCTCTGCTCAGCACCAAGAGGGAGCAGATCGCCACGCTCAGAACCGTCCTGAAGGCAAACAAGCAAACTGCTGAAGTGGCTCTGGCCAACCTAAAGAGCAAATATGAGAATGAAAAGGCGATGGTGACCGAAACCATGATGAAGCTTCGCAACGAGCTCAAAGCGCTGAAGGAGGACGCAGCCACGTTCTCTTCACTCAGAGCAATGTTTGCTACCCGTTGTGACGAATACGTGACTCAACTGGACGAGATGCAGAGACAGCTAGCAGCAGCGGAGGACGAGAAGAAGACGCTTAACTCTCTGCTACGGATGGCCATCCAGCAGAAGCTAGCGCTCACGCAGCGCCTGGAGGATCTGGAGTTTGATCACGAGCAAATACGCCGGCCTGGAGCCAACGGGCGCACCAGAAACACCGCGCCGCGCATCAAATCCAGCCAAACGCACttaCATTCGGTCTGA

Function

symbol description
bicd2 Predicted to enable dynactin binding activity and dynein complex binding activity. Predicted to be involved in microtubule anchoring at microtubule organizing center; protein localization to organelle; and regulation of microtubule cytoskeleton organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and cytosol. Human ortholog(s) of this gene implicated in spinal muscular atrophy with lower extremity predominance 2A and spinal muscular atrophy with lower extremity predominante 2B. Orthologous to human BICD2 (BICD cargo adaptor 2).

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0072393 microtubule anchoring at microtubule organizing center biological_process
GO:0033365 protein localization to organelle biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0034452 dynactin binding molecular_function
GO:0070840 dynein complex binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120717-1 Predicted to enable dynactin binding activity and dynein complex binding activity. Predicted to be involved in microtubule anchoring at microtubule organizing center; protein localization to organelle; and regulation of microtubule cytoskeleton organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and cytosol. Human ortholog(s) of this gene implicated in spinal muscular atrophy with lower extremity predominance 2A and spinal muscular atrophy with lower extremity predominante 2B. Orthologous to human BICD2 (BICD cargo adaptor 2).

Ensembl:

ensembl_id ENSDARG00000098215

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070601 False 2554 mRNA 0.54 8 53344726 53373135
TCONS_00070602 True 2488 mRNA 0.54 9 53344726 53378098

Neighbor

gene id symbol gene type direction distance location
XLOC_036072 gnb1a coding upstream 10076 53269657 ~ 53334650 (+)
XLOC_036071 cacna1db coding upstream 84056 53204017 ~ 53260670 (+)
XLOC_036070 NA coding upstream 192633 53143211 ~ 53152093 (+)
XLOC_036069 nr2c2 coding upstream 202658 53120278 ~ 53142068 (+)
XLOC_036068 wdr46 coding upstream 247972 53080515 ~ 53096754 (+)
XLOC_036074 dcp1a coding downstream 9907 53388005 ~ 53401791 (+)
XLOC_036075 cacna1db coding downstream 45310 53423408 ~ 53436880 (+)
XLOC_036076 cacna1db coding downstream 74583 53452681 ~ 53456702 (+)
XLOC_036077 cacna1db coding downstream 86118 53464216 ~ 53465017 (+)
XLOC_036078 CU638702.1 coding downstream 118103 53496201 ~ 53498302 (+)
XLOC_036065 dre-mir-181b-2 non-coding upstream 320962 53023679 ~ 53023764 (+)
XLOC_036064 dre-mir-181a-2 non-coding upstream 321109 53023539 ~ 53023617 (+)
XLOC_036063 NA non-coding upstream 325246 53018176 ~ 53019480 (+)
XLOC_036062 NA non-coding upstream 327169 53017077 ~ 53017557 (+)
XLOC_036080 NA non-coding downstream 517988 53896086 ~ 53896991 (+)
XLOC_036083 CABZ01066578.1 non-coding downstream 649584 54027682 ~ 54034515 (+)
XLOC_036086 NA non-coding downstream 735938 54114036 ~ 54134106 (+)
XLOC_036088 NA non-coding downstream 783042 54161140 ~ 54163747 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_00235034_00262436 NA coding CI01000050 null 235034 ~ 263619 (+)
bowfin (Amia calva) AMCG00017242 NA coding CM030122.1 CM030122.1 51571356 ~ 51605585 (-)