XLOC_036069 (nr2c2)


Basic Information

Item Value
gene id XLOC_036069
gene name nr2c2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53120278 ~ 53142068 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00070592
CGTGCCCGCGCAACCGCGAACGCGCCCGAGAGGAAGAAAAACTCTCGCACGCTGGCAAACGGGGTCACGAACTATGACCTTTCACTGGagtaaaacaataacaaataatgtGCAATAAACCCGAGAGCGAAAACCCCGCGGCCGTGCGTTTGACAGGAGGAGGTATCATTTTCAGATGCAGAGCTCGGCCAATCAGATGCTTGTAATGACTTCACATTACCATGACAACCAATGTGGAGCTGCTGGCTCAGCAGATATTGACCACTGAGCAGCTTTCAGAGgttcAGTTGTCTCCGTCAGGCAGTTCAGTGATGAGCGGCTCTCCTCAGCGCATTCAGATCATCTCCACCGAGCCCTCGGTCACCAGCCCACAGAGAATACAGATCGTCACAGAGCAGCAGACGGGGCAGAAGATCCAGATAGTGACGGCTCTGGACTCCTCTGTGCCCAAGCAGCAGTTCCTCCTGGCCTCTCCTGATGGCTCTCCAGCGGGTAAAGTCCTGCTGGCGTCCCCAGAGAGCTCCAGCGCCAAACAGCTCATCTTCGCCACTGCCGACAGCCTGGTACCCGGCAGAATACAGTTTGTGACTGATGCCGTGTCCGTGGAGAGGCTTCTGGGTAAAGGCACAGACCTCAGCCGAGTTCAGCCAATTGAATACTGTGTGGTGTGTGGAGATAAAGCCTCAGggaGGCATTATGGAGCTGTGAGCTGTGAGGGCTGTAAGGGTTTCTTCAAGCGGAGCGTGCGCAAGAGTCTGACCTACAGCTGCAGGAGTAACCAGGACTGTGTGATCAACAAACACCACCGCAACCGCTGCCAGTTCTGCCGGCTCCGCAAGTGCCTGGAGATGGGCATGAAGATGGAGTCTGTACAAAGTGAGCGGAAACCCATCGATCTTCCTCGAGAAAAACCTGCGAACTGTGCAGCGTCTACAGAGAAAATCTACATCAGGAAAGACCTGCGCAGTCCGCTTATCGCAACACCCACCTTCATCTCTGAGAAAGATAGCTCacgGTCCAAGCTGTTGGATTCTGGGATGCTCGTCAATATCCAGCAACCCTTAATACAGGCTGATGGCACATTACTGTTAGCAACAGACAAGACGGAGTCGGGGCAGGGTGATCTGGGGACACTCGCTAATGTGGTCACATCATTAGCAAACCTGAACGATTCGCTCAGTAATGGAGAAGCAACAGACGGGCAGCTGGAGGAGTCGCCCAGTGAAATCACACGTGCCTTTGACACTCTGGCTAAAGCGCTGAACCCCGGCGAGCTGACGGAGAGCCAGAGTCTGTCTGAGGTGGAcggagtgggcggagctacaataCAGGTGATCAGCAGAGATCAGATCTCGCCACTCATAGAGGTGGAGGGACCGCTGCTCACCGACACACATGTCAGCTTTAAGctgacGATGCCCAGCCCGATGCCGGAGTATCTGAATGTACATTATATCTGTGAGTCGGCTTCACGTCTCCTCTTCCTCTCCATGCACTGGGCGAGATCTATCCCAGCATTCCTTGCTCTCGGGCAGGAGTGTAACACCGCTCTGGTTCGGGCCTGCTGGAATGAGCTGTTTATTCTGGGTCTGGCTCAGTGTGCTCAGATCATGAGTCTGTCCACCATCCTCACCGCCATCGTCAATCATCTGCAGTCCAGCATCCAGGACGTAGACAAGCTATCAAGTGAACGCATCAAACTCGTGATGGAGCACATCTGGAAGCTGCAGGAGTTCTGCAACAGCATGGCGAAGCTGCAGACGGACGCTTATGAATACGCATACCTAAAAGCCATCGTGCTCTTCAGTCCAGATCATCCAGGTTTGAGTAGCTGCAGCCAGATTGAAAAGTTTCAGGAGAAAGCGCAGATGGAGCTCCAGGACTATGTGCAGAAGACCTATCCGGATGAAACCTACAGGTTGGCTCGAATCCTGCTGCGATTACCGGCGTTGCGTTTGATGAGTTCCAGCATAACCGAGGAGCTGTTCTTCACCGGCCTCATCGGAAACGTACCGATCGACAGCATCATCCCATATATCCTCAAAATGGAGACTGCAGACTACAACAGCCAAATCACAGCCCCCTCCGTGTGACCATCGTTTCATGCGATTCCCATCATCCCTCGCCCCCGAATACATCGCATTATACTGAACCGACCAACAAGCTCTACCTCAAGAGGAGCTGCGACAGCGAAAGCCTTTCTGAAGCGCTACCCGATTGATATTGTGTTGTAGTTTACAGAGAGAgatgcattatgggactttgagtTCCAGGACATTTGCCTCAAATTAAAGGCCTTTCTTATTTTGTAAACTTTAATTTAAAGAAAGAGAAACACTTGAGCACTTCGAGATGATTCCAATGGAAAAATCCCAATTTTTTTTTGAATCGCCCTCGTTAATATTCATAATTATCAAAAGCATGAGCATTTTCATAAGGAGATGTGACTGAATGTATCGGCTGATTACATGATCCAACAAAGGTATGATTTCATTCAgatttgtttctctctctctgaccgtacagccattgaaatgaatgggaatTTAGTGTTTTTCCTGCAGCTCTTAATTTATCCGTACTGTCACTCCTGTCGTCACGACAATCAGCTTCTGCTCAATATATCCGGCTTTTCCTTTGCTGTATTTATTTCAGCTCTAAAGCGCATACAAATGTAGATCTTCGCTTGATTTCCAAAATCACGTATGCTATAGGAGATCTTCAATCGGTGTCTTTAAAGCATCTTTATCGCTGCTGCAATTGTCGTTTTCAAGATGTAATATATCCATAAACATGATGCACTTAGGTTCCTAACATGTTTTTATTCGCAGATCTGCGCACTTAAgttacatttgtacattttaatttgtcttttttttaagaaagatgTCTCGTTTTGTCCCAAATGTGATGCATTGACATGCACTTATTTAACATGCTGTTTCTGAAACAGAAATGTTGACCCAGGCTGTATTTGTTTGGGTTTAAAATCGGTAGACTCTTCCAGACTATGTTAGCCTGATGCTATTGGTTAGCCACCTTGTTTGTTTAGGTTCGAACTAccattaacattattatataggttgttacaaggtgtttgtagctTAATATACAACATTAACCCAGAtaatatagcactgcaaactattaaaatgacaataaaagtcactttttacaacgtttaaagattaaaagctaaagattaagatcccataatgcaatttaaaagcagaaataaaccaaacatgaatcacaaaatatgaaaaactactaatttactgatgttttgttattttttatagtgtataatgtttataatgtgtgttttttttactgttttagagTCATTTCTTCTTGGCCTCATTAATTATGTCCCAAAAAACAActtgttattgttttaaaagcaCGATGGCCTCATAcaagtatttattttaacatggtttgaacacattttttatttgatgccCAATGTTTCTGATCTGTCAATGACTGGTTTATAGGTGTTGTAAATCTATATTGCTGTCTGTCTTCATCTGTCTGTGAGACGATAAGAAAAGCTGTGCATGAAGAGCTCATCAATTTGATTCTGATGTGGAGTTTAAATATTGTGGCTTgaggaaataatatatatatatatatttacagtgcatTCAGAAAGTACCCATTCGCATTCATTCTTGACCATTTTGTTTATTCAGAAGTGCATATACGTTTAATTCATGCTTGATTACAGAGCTGAAACCAGATTTGTGATAACTTTTGCAGATGTATTAAAATGCAAACACTGACATGTGACAATTCTGTTTTTAAGAAGCACAAATGACCATTTTTTCATAGGGGTGAATGAAAATGACTGGTTGTCTATAGTGTTCTCATTTTGTGCAATATagcataaaaacaaaatttacactcaccggccactttattaggtacaccttactagtaccaggtgtGACCCCCTTttactttcagaactgccttaatctttcatggcgtagattcaacaagctactggaaacattggacgtgttgtgtgttcagagatgctcttctgcagagctcggttgtaacgagtgc
>TCONS_00070593
GTGCCCGCGCAACCGCGAACGCGCCCGAGAGGAAGAAAAACTCTCGCACGCTGGCAAACGGGGTCACGAACTATGACCTTTCACTGGagtaaaacaataacaaataatgtGCAATAAACCCGAGAGCGAAAACCCCGCGGCCGTGCGTTTGACAGGAGGAGGTATCATTTTCAGATGCAGAGCTCGGCCAATCAGATGCTTGTAATGACTTCACATTACCATGACAACCAATGTGGAGCTGCTGGCTCAGCAGATATTGACCACTGAGCAGCTTTCAGAGGTCAGTGGTGATGCGAGACATTAAGGGTTCATTCAGACGCAGCAGTAGCGGTGTGTCCTCTATGCAGTCGGTTGCAGTAAACGGATCCATCTATGTGCTGGAAACACTGGTTGTAGTCAGAAGACTCCTAATCAGCCAAAATATTAAGTCtacctttaattttatttgtaagaTCAGGCTTATTCGAGGTCATGCTGTGTGTTCTTACTGTGGGGATAAATAAACAGGATTGT

Function

symbol description
nr2c2 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in several processes, including cell differentiation; positive regulation of embryonic development; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain; retina; and telencephalon. Orthologous to human NR2C2 (nuclear receptor subfamily 2 group C member 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0040019 positive regulation of embryonic development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03310 Nuclear receptors

ZFIN:

id description
ZDB-GENE-080403-8 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in several processes, including cell differentiation; positive regulation of embryonic development; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain; retina; and telencephalon. Orthologous to human NR2C2 (nuclear receptor subfamily 2 group C member 2).

Ensembl:

ensembl_id ENSDARG00000042477

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00070592 False 4077 mRNA 0.45 15 53120278 53142068
TCONS_00070593 True 513 lncRNA 0.47 2 53120279 53124426

Neighbor

gene id symbol gene type direction distance location
XLOC_036068 wdr46 coding upstream 23524 53080515 ~ 53096754 (+)
XLOC_036067 nadka coding upstream 50738 53064920 ~ 53069540 (+)
XLOC_036066 nadka coding upstream 58261 53051701 ~ 53062017 (+)
XLOC_036065 dre-mir-181b-2 coding upstream 96514 53023679 ~ 53023764 (+)
XLOC_036064 dre-mir-181a-2 coding upstream 96661 53023539 ~ 53023617 (+)
XLOC_036070 NA coding downstream 1143 53143211 ~ 53152093 (+)
XLOC_036071 cacna1db coding downstream 61949 53204017 ~ 53260670 (+)
XLOC_036072 gnb1a coding downstream 127589 53269657 ~ 53334650 (+)
XLOC_036073 BICD2 coding downstream 202658 53344726 ~ 53378098 (+)
XLOC_036074 dcp1a coding downstream 245937 53388005 ~ 53401791 (+)
XLOC_036061 NA non-coding upstream 91609 52997540 ~ 53028669 (+)
XLOC_036063 NA non-coding upstream 100798 53018176 ~ 53019480 (+)
XLOC_036062 NA non-coding upstream 102721 53017077 ~ 53017557 (+)
XLOC_036078 CU638702.1 non-coding downstream 354133 53496201 ~ 53498302 (+)
XLOC_036080 NA non-coding downstream 754018 53896086 ~ 53896991 (+)
XLOC_036083 CABZ01066578.1 non-coding downstream 885614 54027682 ~ 54034515 (+)
XLOC_036086 NA non-coding downstream 971968 54114036 ~ 54134106 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017064 NA coding CM030122.1 CM030122.1 43155639 ~ 43270969 (-)