RNA id: TCONS_00070620


Basic Information

Item Value
RNA id TCONS_00070620
length 3747
RNA type mRNA
GC content 0.58
exon number 23
gene id XLOC_036087
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54135642 ~ 54155096 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGGCTGGACTTTGACGTGAAGACTTTCTGCCACAACCTGCGGGCCACCAAACCGCCGTACGAGTGCCCGGTGGAGAGCTGCCGTAAGGTGTACAAGAGCTACAGCGGCATCGAGTACCACCTGTACCACTACGACCACGAGAACCCACCGCCACCACCGCAGGGGACGCCACAGAAGAAGCGCAAGGGCCGCCCGCCTCGAGGATCCAGCGATGGTCCTGATTCCAGCACAGGCCCCGGGGCCACCAGCGGGCAGAACACGGCTCCGAGCAGCCCTGCAGAGCGCTCCGAACGCTCGCACTCACCTGTCAGGGAGACCATGACCTACGCTGAGGCCCAGCGCATGGTGGAGATGGAGATCCGCGGGCGCGTGCACCGCGTCAGCATCTTCCAGAATCTGGACGTGGTCTCTGAGGAGGACAGCGGGGCTGAGGAGCCTCCAGGGGCCACGGGTAGTGCAGCCGCAGCCTGTAACGGAGGCGGCGAGAGCGGAGGAGGCGACAGAATGGACACAGCAAACGGGGAGAAAGGAGCGCAGAAAACAGGGAAGCACAAGAGTAAGGAGAAGAAGAAGGACAGCGGAGCACATCATCACATCAACACCTCAGGACCCGCCGTCAAACTGCCCGAGGTGGTGTTCCGAGAGCTGGATCAGGACAGACCCGACGCGCCGCCCAGACCCATGAGCTACTACAGGTACATCGATAAATCTGCGGAGGAGCTGGACGAGGAGGTGGAGTACGACATCGATGAGGAGGACTACATCTGGCTGGACATCATGAACGAGAAGCGGCGGTCTGACGGCGTGGCCCCCATCCCGCAGGAGGTGTTCGAGTATCTGATGGACCGCCTGGAGAAAGAGTCCTACTTCGAGAGCCACAATAAGGGCGACCCGAGCGCTCTGATTGACGAGGATGCGGTCTGCTGCATCTGTAACGACGGCGAGTGTCAGAACAGTAACGTGATCCTGTTCTGCGACATGTGTAACCTGGCGGTGCACCAGGAGTGTTACGGCGTGCCCTACATCCCCGAGGGCCAGTGGCTGTGCCGCCGCTGCCTGCAGTCGCCATCCAGAGCTGTCGACTGCGCACTGTGCCCTAACAAGGGTGGAGCCTTCAAGCAGACCGACGACTCGCGATGGGCGCATGTGGTGTGTGCGCTCTGGATACCGGagGTGTGTTTTGCGAATACGGTGTTCCTGGAGCCGATCGACAGCATTGAGCACATCCCGCCGGCACGCTGGAAACTAACCTGCTACATCTGTAAGCAGCGCGGCTCCGGCGCCTGCATCCAGTGCCACAAGGCGAACTGCTACACTGCCTTCCACGTCACCTGCGCTCAGCAGGCCGGCCTCTACATGAAGATGGAGCCGGTGCGGGAGACCGGAGCCAACGGCACCTCCTTCAGCGTACGCAAGACCGCCTACTGCGACATACACACACCGCCCGGCTCCGCACGCCCGCTCGGGGGAGTGGGCGGGGTCAGCGCTGACTCCTCCCACAGCGAAGCAgagccagaggaggaggaggagccgccGGCTGCTGAGGATGACGGGAAGGGCTGGAGCTCGGAGCGGGCGAAGAGAGCGAAGGCGAAGTCACGGCTGAAGATGAAGAGAGCCAGAAAGATCCTGGCGGAGCGCAGAGCGGCCGCACCCGTGCTGTCTGTGCCCTGCATACCACCACACAAgtacagcagcacacacacacatgcattacacacacacacacacacactggagaatAgtcattcacatctgcagctgacAAACAGACAGACGGCCAACgcactgccctttataaataaactgcacagttgTCTATGTGGGCGGAggaatacagaaggtgtgtgtgtgcagagggACGGTGAGGAGAAACACTCGGTGCTGAAGGAGCAGCTGAAGGCGTGGCAGCGTCTCCGTCATGATCTGGAGAGAGCCAGACTGCTGGTGGAGCTGATCCGCAAGAGGGAGAAGCTAAAGAGAGAGACGATTAAGGTGCAGGAGATGGCGATGGAGATGCAGCTCACTCCACTGCTGGTGTTGCTGCGCAGAACACTGGAGCAGCTGCAGGAGAGAGACACCAACAACTTCTTCACTGAGCCCGTACCGCTGAgcgaggtacacacacacacacacacacacactgatacacacacactgaAGACTCatgtgcacagacacacacacgcccaCATACAAACATTTGTACACATTTACTTATATATACTCATACACACGCAGATGCATACATacaatgatacacacacacacacttactcactcATGTGCACAGACAtggtcgcacacacacacattcgtacacatttaattatatacacacacactcatgtacacatgcacacacacacacacacacacacatactcactatTGCACGgacaggcacacacacatacatttgtacacattcactcatgtacacacacacacacacacacacacacatactcactatTGCACGgacaggcacacacacatacatttgtacacattcactcatgtacacacacacacacacacacacacacacacagatgcttaCATAAActgatacatacacacactcatgctcACATGCCTACGCACCTTCATATGCACAGACacacgcaaacaaacacacacaaactgatgGAGCGCGGAGCCACCATACACCACAGCACTGGAGGAGCCCGGCACGAGGAGGGAGAGAGCAGCGGCCACCAGATCAAAgatCTGAGCTCCTCTTCTTCAGCTCTGGCTCCTGAAGTGGGCCGCCGCACCTCTGTCTTGTTCTCCAAGAAGAACCCTAAAGTCTCTGGTCCCCCGAAACGCCCTGGCCGGCCCCCGAAGAACCGCGAGGTGCTGCATGGCGCTGGGGTGTTGAGCTCCAGCCCCATCGGGCCCCCGCAGCTGCCCTCACTCACAGCTTCTCGCAAGAGAACACACAGCCCCCAGTCCAGCTCCAGCTCCGAGTCCGACAGCGATCACGAACACCTCATCCTGGatctgCACAGTAATGGTTTTGGTGGAAGCGGTCAGCCGAAGACGGAGAGTTTTCTGGTGTACAGGAACGAACGCAGCCTGCCGAGATCCAGCTCCGACTCTGAGTCCACCAGCAGCAGTAGCAGCAGCGCAGCGTCTGACAGgaccagcactATGACTCGCTCCCGttggtcaatctggcaacctgcgcttgcAAGGAGAAGCAGTGAATCACACCGCTCAGTGGAAACGAGGAGCACCGAGAACGACTCGTACTCTATAGGAGGATCCAGAGGAGTGTCTCACTtggtgCGGGGCAGAGGTCGCTCTGGATGCTGGATGAGCTCAGATGATTACAGCTCTCTGGACGCTCTGGATCTGGTGTGGGCCAAATGCAGAGGATACCCATCATACCCTGCTCTGATCATCGATCCTAAGATGCCACGTGAGGGAGTGTTTCACCGCGGTGTGCCGATCCCCGTCCCGCCTCTGGAGGTGCTGAAGCTGGGAGAGCAGATGACCCAGGAGGCCCGAGAACACCTGTTCCTGGTGCTGTTCTTCGACAACAAGAGGACCTGGCAGTGGCTGCCGCGCTCTAAGCTGGTTCCTCTGGGGGTGAATCAGGATCTGGATAAGGAGAAGATGCTGGAGGGCAGGAAGTCCAACATCAGGAAGTCCGTGCAGGTGGCGTACCACCGGGCCATGCAGCACCGCAACAAGGTGCAGGGAGACCCCAGCAGCGACACCAGCGACactgactga

Function

GO:

id name namespace
GO:0009952 anterior/posterior pattern specification biological_process
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-731 Enables histone binding activity. Acts upstream of or within anterior/posterior pattern specification. Located in chromatin. Is expressed in brain; digestive system; epithelium; head; and olfactory pit. Orthologous to human BRPF1 (bromodomain and PHD finger containing 1).

Ensembl:

ensembl_id ENSDART00000164153

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071979 lncRNA upstream 3244 54114036 ~ 54134106 (+) False XLOC_036086
TCONS_00072316 lncRNA downstream 6044 54161140 ~ 54163747 (+) False XLOC_036088
TCONS_00072317 lncRNA downstream 6092 54161188 ~ 54163747 (+) False XLOC_036088
TCONS_00071983 lncRNA downstream 6194 54161290 ~ 54163731 (+) False XLOC_036088
TCONS_00071982 lncRNA downstream 6194 54161290 ~ 54163731 (+) False XLOC_036088
TCONS_00071981 lncRNA downstream 6194 54161290 ~ 54163731 (+) False XLOC_036088
TCONS_00070616 mRNA upstream 31616 54081835 ~ 54105734 (+) False XLOC_036085
TCONS_00070615 mRNA upstream 33540 54081819 ~ 54103810 (+) False XLOC_036085
TCONS_00070614 mRNA upstream 64685 54055390 ~ 54072665 (+) False XLOC_036084
TCONS_00070612 mRNA upstream 113576 54013199 ~ 54023774 (+) False XLOC_036082
TCONS_00070611 mRNA upstream 191316 53928472 ~ 53946034 (+) True XLOC_036081
TCONS_00070621 mRNA downstream 33882 54188978 ~ 54201689 (+) False XLOC_036089
TCONS_00070622 mRNA downstream 47458 54202554 ~ 54210276 (+) True XLOC_036090
TCONS_00070623 mRNA downstream 108850 54263946 ~ 54279435 (+) False XLOC_036091
TCONS_00070624 mRNA downstream 119259 54274355 ~ 54279435 (+) True XLOC_036091
TCONS_00070625 mRNA downstream 129865 54284961 ~ 54286201 (+) True XLOC_036092
TCONS_00070607 other upstream 639048 53496201 ~ 53498302 (+) True XLOC_036078
TCONS_00070598 other upstream 881588 53245642 ~ 53255762 (+) True XLOC_036071
TCONS_00070588 other upstream 1113586 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070587 other upstream 1113733 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070576 other upstream 1593958 52530937 ~ 52543392 (+) False XLOC_036052

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00017343 True 3651 mRNA 0.67 16 CM030122.1 54127687 ~ 54143175 (-)