RNA id: TCONS_00072318


Basic Information

Item Value
RNA id TCONS_00072318
length 327
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id XLOC_036088
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54161140 ~ 54163747 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGATCTCCCTGAGCTGCAACTGCAGACGGTCCTCTTGGATCAGGAGTGGAACAGCAGTGCTGGTGATCAGTTTTTTCAGCCGTACAGAACTAAACTCCAGATGAATGAAGCGAGCGCAGAGTCACAGCAGGCCTTCTGGATCCTGCGCTATAACTGTTTCTCAGCTCAGTCTGGATCTGTTGTCTCAGTCTCTGCTCACAGAAATGACCAGCCACTCATCACAGCATCCCACACCGTCCAGCACACAggtgtccatctgtctgtctgtgtgtgtgtgtgtgtgtgtttgtgtgtccttTTTCTTTAAACTGGAATGATAAACAAC

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019395 fatty acid oxidation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071979 lncRNA upstream 27872 54114036 ~ 54134106 (+) False XLOC_036086
TCONS_00071984 lncRNA downstream 29154 54192901 ~ 54193492 (+) True XLOC_036089
TCONS_00070620 mRNA upstream 6882 54137350 ~ 54155096 (+) True XLOC_036087
TCONS_00070619 mRNA upstream 18830 54135642 ~ 54143148 (+) False XLOC_036087
TCONS_00070616 mRNA upstream 56244 54081835 ~ 54105734 (+) False XLOC_036085
TCONS_00070615 mRNA upstream 58168 54081819 ~ 54103810 (+) False XLOC_036085
TCONS_00070614 mRNA upstream 89313 54055390 ~ 54072665 (+) False XLOC_036084
TCONS_00070621 mRNA downstream 25231 54188978 ~ 54201689 (+) False XLOC_036089
TCONS_00070622 mRNA downstream 38807 54202554 ~ 54210276 (+) True XLOC_036090
TCONS_00070623 mRNA downstream 100199 54263946 ~ 54279435 (+) False XLOC_036091
TCONS_00070624 mRNA downstream 110608 54274355 ~ 54279435 (+) True XLOC_036091
TCONS_00070625 mRNA downstream 121214 54284961 ~ 54286201 (+) True XLOC_036092
TCONS_00070607 other upstream 663676 53496201 ~ 53498302 (+) True XLOC_036078
TCONS_00070598 other upstream 906216 53245642 ~ 53255762 (+) True XLOC_036071
TCONS_00070588 other upstream 1138214 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070587 other upstream 1138361 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070576 other upstream 1618586 52530937 ~ 52543392 (+) False XLOC_036052

Expression Profile

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