Gene
RNA
| Item | Value |
|---|---|
| gene id | G213405 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 765645 ~ 768598 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU242087 | False | 779 | lncRNA | 0.51 | 6 | 765645 | 768598 |
| TU242088 | True | 355 | lncRNA | 0.50 | 2 | 767837 | 768598 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000050_00675537_00675797 | NA | coding | downstream | 89473 | 674960 ~ 676172 (-) |
| CI01000050_00662789_00668402 | NINJ1 | coding | downstream | 97243 | 661076 ~ 668402 (-) |
| CI01000050_00560254_00585128 | BRPF1 | coding | downstream | 179333 | 559983 ~ 586312 (-) |
| CI01000050_00552377_00552664 | NA | coding | downstream | 212784 | 551489 ~ 552861 (-) |
| CI01000050_00468156_00477480 | CRELD1 | coding | downstream | 288165 | 467368 ~ 477480 (-) |
| CI01000050_00786890_00789088 | NA | coding | upstream | 18036 | 786634 ~ 789088 (-) |
| CI01000050_00793175_00797131 | NA | coding | upstream | 24477 | 793075 ~ 798370 (-) |
| CI01000050_00849460_00849759 | NA | coding | upstream | 80418 | 849016 ~ 850294 (-) |
| CI01000050_01118519_01162499 | CACNA2D3A | coding | upstream | 349921 | 1118519 ~ 1162499 (-) |
| CI01000050_01319798_01336147 | NA | coding | upstream | 550492 | 1319090 ~ 1336696 (-) |
| G213397 | NA | non-coding | downstream | 16929 | 748511 ~ 748716 (-) |
| G213395 | NA | non-coding | downstream | 19033 | 745958 ~ 746612 (-) |
| G213391 | NA | non-coding | downstream | 47348 | 716882 ~ 718297 (-) |
| G213365 | NA | non-coding | downstream | 93812 | 671541 ~ 671833 (-) |
| G213363 | NA | non-coding | downstream | 95118 | 670314 ~ 670527 (-) |
| G213403 | NA | non-coding | upstream | 4351 | 772949 ~ 773661 (-) |
| G213427 | NA | non-coding | upstream | 59676 | 828274 ~ 828669 (-) |
| G213428 | NA | non-coding | upstream | 60151 | 828749 ~ 829147 (-) |
| G213441 | NA | non-coding | upstream | 64052 | 832650 ~ 833366 (-) |
| G213434 | NA | non-coding | upstream | 101729 | 870327 ~ 871656 (-) |
| G213174 | NA | other | downstream | 512583 | 235551 ~ 253062 (-) |
| G213171 | NA | other | downstream | 747664 | 16080 ~ 17981 (-) |
| G213429 | NA | other | upstream | 60744 | 829342 ~ 829802 (-) |
| G213497 | NA | other | upstream | 214880 | 983478 ~ 996539 (-) |
| G213704 | NA | other | upstream | 544385 | 1312983 ~ 1317106 (-) |
| CI01000050_02230904_02233429 | NA | other | upstream | 1464050 | 2228865 ~ 2233429 (-) |
| G213948 | NA | other | upstream | 1559915 | 2328513 ~ 2331316 (-) |
