CI01000050_00560254_00585128 (BRPF1)


Basic Information

Item Value
gene id CI01000050_00560254_00585128
gene name BRPF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 559983 ~ 586312 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_00560254_00585128.mRNA
AGTAGTCCAATATTACTTGCAGCATTATTTGTTTTCTACTTGCATACTAAATGGTTGCAGCGGGCAACCGCGTGACGACCGACGGCTGATTCGTCAGTATAGAGAGGAGCAGAAAAATAATCCAGGACATATAGAGAGTTCTGATTGAATTTTTTCAAGTATCTGCGTTAACTGACTGTATGTTACGAATGAGAAATATTATCGCCAAAATACGTTTAAAAACGCGGGTTCTGGTTTGGAGGATTGGTGAATGTGCGGACACGGATCGCGCGTTAGCCCCTTTGTTCGTTAGCTTCAGTTCCTGGTGTTATTCAATGTGTGATGATCAGAATTCATAAAGGATATATTAATTCAGCTCAAACTCTTCTGCTGTGAATTAAACTCATCTCAGTGTGAATTCTCATTCTCGGAGTGAGCGAGAAATCCGCCGTGGACTCTGGAGTAGTAAGTGTTTACGACAAAACACTTTCACCTGTTAGAGATCTGATTGTGTGTAAAATTATCACGTATAAACTCATATTTCACATGATCATATTTTTATACTTTGCACATTGGCAAAGGAAAGGCGGGGTTGCATACAGTCAGCCACTAACAAAAACTACCATGGATTTACCATGTTTTTGAACCTGTACCATGGTACATTCTGTGAAGTTTTTTCATGTAAATACATTGTAAATGACTATGGTAATCATTTAGTACCACGGTAAATGTCAAAATATGATGGTAACACGTCAGTAGTTTTTTGTGATTGCGTTCCATTGAATTTCAGTGCAGGTTTTGTAGTAAACAGACTCAGATCAGATGAAGTGAGATCATTTGTGTTCATGTGTAACGCTAATGGAGGGAAATACAGTTTCTCTTCAGTCAGTTCAAGGCTGTTGTTTCTGGTGAAGAAACGATTTTCACTCAAGAAATTACTAGTAAATTTAAGTACACAGAGTCACCAAGTAACACATTGAATTAAAGGTGAAATTTTGACGTAGAATGTTCTTATAAGAGTCCAGTAATCTTTGTTTCATTTACAACTTTAAAACATTTTACAGTGTAATTTAATAGCCAACTGTATTGTTTTATTTTATGTATTGTGAAAAGCTCTATACTGATAAACTTGAATTAATGAAGTAATTGCAGTGTTTTTGTCGTCCTCACAGATGTAAGCCAGACCTGTCGTGAGCATTGACGGCATGGGGCTGGACTTTGACGTGAAGACGTTCTGCCACAACCTCCGGGCGACCAAACCCCCCTACGAGTGTCCGGTGGAGAGCTGCCGTAAGGTCTACAAAAGCTACAGCGGCATCGAGTACCACCTGTACCATTATGACCACGACAACCCGCCTCCACCGCAGGGCAGCCCGCAGAAGAAGCGCAAGGGCCGCCCGCCGCGCTCCAGCTTGCCCGGCTCTGCCGACGGCCCTGACTCCAGCACGGGATCTGGGGTTCCCGGGCAAGCGGCGACGCCGGGCAGCCCGGCTGAACGCTCGGAGCGCTCGCACTCGCCCGTCAGAGAGACCATGACCTACGCCGAAGCGCAGCGGATGGTGGAGCTGGAGATCCGCGGGCGGGTTCACCGCATCAGCATCTTTGACAACCTGGATGTGGTCTCGGAGGAGGACAGCGGCGCCGAAGAGCCTCCGTCGGCGGGAATGGGCGCGTGTAACGGCGGCGAGGCCGGGGGAATCGGCAAGGACAGACTGGATGGTTCTGCGGCCAATGGGGAGAAAGGGCCTCAGAAAACTGGAAAGCACAAGAGCAAAGAGAAGAAGAAAGACAGCGGCTCACACCATCACATGAACCCGCCCGGGCCGGCCGTCAAGCTGCCTGAGGTGGTGTTTCGAGAGCTGGATCAGGAGAGACCGGACGCGCCCCCTCGACCCATGTCTTACTACAGGTACATTGACAAGTCTGCCGAGGAGCTGGATGAAGAGGTGGAGTATGATATAGATGAGGAAGACTACATCTGGCTGGACATCATGAATGACCGGCGTCGTGCTGATGGCGTGGCGCCCATCCCTCAGGAAGTGTTTGAGTATCTGATGGACCGGCTGGAGAAGGAGTCTTACTTTGAGAGCCACAACAAGGGCGACCCCAGCTCTCTGATCGATGAAGATGCCGTGTGCTGTATCTGTAATGACGGCGAGTGTCAGAACAGCAACGTCATCCTGTTCTGTGACATGTGTAACCTGGCAGTGCATCAGGAGTGCTACGGCGTTCCCTACATCCCAGAGGGCCAGTGGTTGTGTCGCCGCTGCTTGCAGTCGCCCTCCAGAGCCGTGGACTGCGCCCTCTGCCCCAACAAGGGCGGCGCTTTCAAGCAGACGGACGACGCACGCTGGGCACATGTAGTGTGTGCACTCTGGATCCCAGAGGTGTGTTTTGCAAATACGGTCTTCCTGGAGCCCATCGACAGCATCGAGCACATTCCTCCTGCCCGCTGGAAGCTGACCTGCTACATCTGCAAACAGCGTGGCTCTGGCGCCTGCATCCAGTGCCACAAAGCCAACTGCTACACTGCCTTCCACGTCACCTGCGCCCAACAGGCCGGCCTCTACATGAAGATGGAGCCCGTGCGTGAAACCGGCGCAAACGGGACTTCGTTTAGCGTGCGCAAAACGGCCTACTGTGACATTCACACACCGCCTGGCTCCGCCCGACCACTGGGAGGTGTGGGCGGAGCCAGTGTGGGCTCCTCCCACAGCGAGGGCGAGGCAGAGGATGAGGAGGATACTGCAGGCGGCGAGGAGGATGGAAAGGGATGGAGCTCAGAGCGGGCGAAGAGGGCCAAAGCAAAATCACGGCTGAAGATGAAAAGGGCCAGAAAGATCCTGGCTGAGAGGAGAGCGGCCGCACCGGTGGTGTCAGTGCCGTGTATTCCACCACACAAGTTGAGTAAGATCACCAGTAACCTGACGGTGCAGAGGAAGAGTCAGTTCATGCAGAGACTGCACAGCTACTGGACGCTGAAGAGGCAGAGCCGCAACGGCGTTCCTCTCCTGCGACGTCTGCAGACGCACCTGCAGTCCCAGCGCAATGCCGAGCCACTCCCCCCCACGAGGGACGGCGAGGAAAAGCACTCGGTGTTGAAGGAGCAGCTGAAAGCGTGGCAGAGACTCCGGCACGACCTGGAACGAGCCCGACTGCTGGTGGAGCTCATCCGCAAGAGAGAGAAGATCAAGAGAGAGGCTATCAAGGTGCAGGAGTTGGCGTTAGAGATGCAGTTGACTCCATTCCTGGTGTTGATGCGCAGCACTCTGGAGCAACTGCAGGAGCGAGACACCAGTAACTTCTTCACTGAGCCTGTACCTTTAAGTGAGGTCCCAGATTACCTGGACCACATCGAGCGTCCGATGGATTTCCAGACCATGTGGAAGTGTTTGGAGTCACATCGCTATCTCAGCTTTGAAGCTTTTGAGGCTGACTTTCTGTTGATTGTCAACAACTGTTTGAATCGGCGGCGTTTGCCTCTGGAGGAGCAGCTGCAGATCCTGCAGGCGCGCTATGATGAGGTCATGTCAGGGAAGCACAGCATCGGTCAGTCGCGGCGAGCCAAAGCCCTGAAGAAAGAGATGACGGTCCTGAAGCGTAAGCTGGCACACCAGCGCGAGGGCATCTGCGGCCTGGGCGGCCACGAGTCGGGTCTGTCGCTGGAGCGCGGCTCGGTCCTCGCACATCACGCCTCGGGAGGAGCCCGACACGATGAAGGAGAGAGCAGCAGCCACGAGATCAGTGGGAAAGATCTGAGCACGTCGTCTTCTGCGCTGGCCCCTGAGGTCGGCCGGCGCACCTCTGTCCTCTTCTCCAAGAAGAACCCTAAAGCCGCCGGACCTCCCAAGCGCCCCGGTCGACCCCCGAAGAACCGCGAAAGCCTGCACGGGCCGGGAGTGTTGAGCTCCAGTGCCATCGGCCCACCGCAGCTTCCCTCGCTCACCCCGTCACGCAAGAGACCCCACAGTCCTCAGTCCAGCTCCAGCTCGGAGTCCGACAGCGAACACGATCACCTCATACTGGATCTTCACAGTAATGGTTTCGGTGGAAGTGGTCAGCCGAAGACAGAGAGTTTTCTGGTGTACAGGAACGAACGCAGTCTGCCACGCTCCAGCTCTGACTCGGAGTCCACCAGCAGCAGCAGCAGCAGCGCTGCGTCCGACCGGACCAGCACCACTCCCTCTAAACAGGGTCGTGGGAAGGCCTCGTTCTCACGCTCGGCGTTTCAGGAGGACAGCAGCGAGGAGACGTCCGGCACGGAGAACGACTCCTACTCCATGGGAGGATCCCGAGGAGTGTCTCACTTGGTTCGAGGCAGGGGCCGATCGGGATGCTGGATGAGTTCAGATGACTACAGCTCTTTGGATGCTCTCGATCTGGTGTGGGCCAAGTGCAGAGGATACCCATCATACCCCGCTCTGTATCCACGCCCAAATCTCTCAGCCTGCCACAGTATCCACGCCCAAATCTCTCAACCTGCCACAGTAGCCACACCCAAATCTCTCAGCCTGCCACAGTAGCCACGCCCAAATCTCTCAACCTGCTATAGTAGCCACACCCCAATCTTGCAGCCTGTTACAGTAGCCACACCCCAATCTTGCAGCCTGTTACAGTAGCCACGCCCCAATCTCTCGCTATAGGCTGAGCTAATAGTGATTGACAGATTTTAGAGGACTATACAATACTATAACACACTCAGTGTTTTGATGGTGTCTGGGAGGCTCATTGTTTACAATTTTGGGACAGATAAGCCCATGAATGACATACTAATAGTAGTCAGTGAACAATAAA

Function

symbol description
brpf1 Enables histone binding activity. Acts upstream of or within anterior/posterior pattern specification. Located in chromatin. Is expressed in brain; digestive system; epithelium; head; and olfactory pit. Orthologous to human BRPF1 (bromodomain and PHD finger containing 1).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K11348 BRPF1; bromodomain and PHD finger-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_00560254_00585128.mRNA True 4773 mRNA 0.53 14 559983 586312

Neighbor

gene id symbol gene type direction distance location
CI01000050_00552377_00552664 NA coding downstream 7122 551489 ~ 552861 (-)
CI01000050_00468156_00477480 CRELD1 coding downstream 82503 467368 ~ 477480 (-)
CI01000050_00362015_00370409 TMCC1 coding downstream 189574 360400 ~ 370409 (-)
CI01000050_00286164_00294317 NA coding downstream 265666 285258 ~ 294317 (-)
CI01000050_00278324_00281820 NA coding downstream 278163 278131 ~ 281820 (-)
CI01000050_00662789_00668402 NINJ1 coding upstream 74764 661076 ~ 668402 (-)
CI01000050_00675537_00675797 NA coding upstream 88648 674960 ~ 676172 (-)
CI01000050_00786890_00789088 NA coding upstream 200322 786634 ~ 789088 (-)
CI01000050_00793175_00797131 NA coding upstream 206763 793075 ~ 798370 (-)
CI01000050_00849460_00849759 NA coding upstream 262704 849016 ~ 850294 (-)
G213327 NA non-coding downstream 20809 538893 ~ 539174 (-)
G213326 NA non-coding downstream 22468 536533 ~ 537515 (-)
G213324 NA non-coding downstream 24098 535564 ~ 535885 (-)
G213317 NA non-coding downstream 30771 528984 ~ 529212 (-)
G213202 NA non-coding downstream 31841 527456 ~ 528142 (-)
G213337 NA non-coding upstream 1699 588011 ~ 588257 (-)
G213339 NA non-coding upstream 5803 592115 ~ 592513 (-)
G213313 NA non-coding upstream 31403 617715 ~ 622111 (-)
G213316 NA non-coding upstream 43735 630047 ~ 638632 (-)
G213354 NA non-coding upstream 55845 642157 ~ 642373 (-)
G213174 NA other downstream 306921 235551 ~ 253062 (-)
G213171 NA other downstream 542002 16080 ~ 17981 (-)
G213429 NA other upstream 243030 829342 ~ 829802 (-)
G213497 NA other upstream 397166 983478 ~ 996539 (-)
G213704 NA other upstream 726671 1312983 ~ 1317106 (-)
CI01000050_02230904_02233429 NA other upstream 1646336 2228865 ~ 2233429 (-)
G213948 NA other upstream 1742201 2328513 ~ 2331316 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017343 NA misc CM030122.1 CM030122.1 54127687 ~ 54145216 (-)