G213316


Basic Information

Item Value
gene id G213316
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 630047 ~ 638632 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU241988
TCAGTGGCGCCCCCTGCCGTCCCTTCAGCACCCTGCTGGCCATCACACTGCTTACACATGCGGATGTTCTTGCTCTCTGACACCTTCGAACACTTACCACAGACGGCCGCGCCGCAGGTCTTGCAGTGGTGCTTGCGTTTGGTGAAATTGAAGGTCTCACTACAGCCTTTGCATGTCTCTCGTTCCTTCTCTCGCTTCTTTGAGCTCTTCTACAGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGTCTGTTTATTCGTCATACGGCTCTCTGCTGGATTCTGAACAGTGTGAGTGTTTGATTCACTAGATCTGGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU241988 True 346 lncRNA 0.52 3 630047 638632

Neighbor

gene id symbol gene type direction distance location
CI01000050_00560254_00585128 BRPF1 coding downstream 43735 559983 ~ 586312 (-)
CI01000050_00552377_00552664 NA coding downstream 77186 551489 ~ 552861 (-)
CI01000050_00468156_00477480 CRELD1 coding downstream 152567 467368 ~ 477480 (-)
CI01000050_00362015_00370409 TMCC1 coding downstream 259638 360400 ~ 370409 (-)
CI01000050_00286164_00294317 NA coding downstream 335730 285258 ~ 294317 (-)
CI01000050_00662789_00668402 NINJ1 coding upstream 22444 661076 ~ 668402 (-)
CI01000050_00675537_00675797 NA coding upstream 36328 674960 ~ 676172 (-)
CI01000050_00786890_00789088 NA coding upstream 148002 786634 ~ 789088 (-)
CI01000050_00793175_00797131 NA coding upstream 154443 793075 ~ 798370 (-)
CI01000050_00849460_00849759 NA coding upstream 210384 849016 ~ 850294 (-)
G213313 NA non-coding downstream 7936 617715 ~ 622111 (-)
G213339 NA non-coding downstream 37534 592115 ~ 592513 (-)
G213337 NA non-coding downstream 41790 588011 ~ 588257 (-)
G213335 NA non-coding downstream 48373 553487 ~ 581674 (-)
G213327 NA non-coding downstream 90873 538893 ~ 539174 (-)
G213354 NA non-coding upstream 3525 642157 ~ 642373 (-)
G213357 NA non-coding upstream 8445 647077 ~ 647288 (-)
G213207 NA non-coding upstream 12276 650908 ~ 654578 (-)
G213363 NA non-coding upstream 31682 670314 ~ 670527 (-)
G213174 NA other downstream 376985 235551 ~ 253062 (-)
G213171 NA other downstream 612066 16080 ~ 17981 (-)
G213429 NA other upstream 190710 829342 ~ 829802 (-)
G213497 NA other upstream 344846 983478 ~ 996539 (-)
G213704 NA other upstream 674351 1312983 ~ 1317106 (-)
CI01000050_02230904_02233429 NA other upstream 1594016 2228865 ~ 2233429 (-)
G213948 NA other upstream 1689881 2328513 ~ 2331316 (-)

Expression


Co-expression Network