CI01000050_01447924_01453746 (EXORH, RHO)


Basic Information

Item Value
gene id CI01000050_01447924_01453746
gene name EXORH, RHO
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1447422 ~ 1453836 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_01447924_01453746.mRNA
AGATCTCTTGCTTGCTCTCAGGGACTTCATTTGCTTTCCAACTTCGTCCATCTGCTTTCTCCGTTTTGACTCTCGACCAGTGAACCAAATATGAATGGAACGGAAGGTCCGAACTTCTACGTGCCGATGTCCAACAAGACTGGTTTGGTTCGCAGCCCGTTTGAGGAGCCGCAGTACTACCTAGCGGAGCCGTGGAAGTACTCGCTGCTGGCCGCATACATGCTCTTCCTCATCGCCACCTCATTCCCCGTCAACTTCCTCACGCTCTATGTCACGGTGCAGCACAAGAAGCTCCGCACACCCCTCAACTTCATCCTACTCAATCTGGCCGTGGCCGACCTGTTCATGGTGGTGGGCGGCTTCACCGTCACGCTCTACACGGCCCTGAATGGGTACTTCGTCCTCGGGGTCACGGGTTGCAACATCGAAGGCTTTTTCGCCACCCTGGGTGGTGAGATCGCGCTGTGGTCTCTGGTGGTCTTGGCTATCGAGCGCTACATTGTGGTGTGTAAGCCAATGACCACGTTTCGTTTCAGTGAGAAGCACGCCATCATAGGAGTGGGCTTCACCTGGGTCATGGCCCTCACCTGCGCCATGCCGCCCCTGCTGGGATGGTCCAGGTATATTCCGGAGGGAATGCAGTGCTCCTGCGGAATAGATTACTACACTCCCAAACCTGAAGTCAACAACACCTCGTTTGTCATCTACATGTTCGTCCTGCATTTCTCCATCCCACTGCTGATCATCTTCTTCTGCTACAGTCGTCTGCTCTGCACTGTCCGCGCGGCTGCTGCTCAGCAGCAGGAATCAGAGACGACCCAGCGGGCTGAGCGGGAAGTGACGCGTATGGTGGTTGTCATGGTGATTGCGTTCCTAGTGTGCTGGGTGCCATATGCCAGTGTGGCCTGGTACATCTTTGCTAATCAAGGGGCTGAATTTGGTCCTGTCGCCATGACAGTACCAGCTTTCTTTGCTAAGAGTGCAGCGCTCTACAACCCGGTCATCTACATCATACTCAACAGACAGTTCAGGAACTGCATGCTCACTACGGTCTGCTGTGGAAAGAACCCGTTTGGTGAGGAGGAGACCAGCATGACGGTCTCCAGTAAGACCCAGTCCTCGGTGGTCTCGTCCGCTCAAGTGGCTCCCGCCTGAACATCCGAACGGCTCACAACTGGACCAGTCCGGCTCGCGGCCTCCTACAGGCCAAATACAGCTCTCCAAGTCGACTTGGCTTCCATCTGCTACATCAACAACTTATTCTGCCTTTGTATCTTACAAAACTGGCCAATCAGATCTCTATAATACTGCTGTATGTTTTGAACTGTGTGCGATTTATATGGAAAATCCTTGGAATGTGTTTAGTAATGTGATGGCATTTCAATGTCCGTTCCATTAGCTTCGGCTTCACCGCTGTTTGTTGATTCTCCGGGTATTAGATGAATATGTAGCTATGATTTTGTAAATTTTGACTATTGTAGGCTTATTTTTTGAACCCAAGAAGTGAGACTGAGCGCTGGAGCCACAAGAGACCTCAGGAGATACGCTAACAAAACAATTCTGTGAACGTTTAGATGTAAATGTTGTTAAGTTTGAATATGTGTGAAGATATGAATTTGCCTGCAAATTAAAAATATAGAGGCAAAGAAGAAATAAA

Function

symbol description
exorh Enables G protein-coupled photoreceptor activity and retinal binding activity. Acts upstream of or within absorption of visible light and circadian regulation of gene expression. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; heart; nervous system; testis; and yolk.
rho Enables G protein-coupled photoreceptor activity and retinal binding activity. Acts upstream of or within absorption of visible light. Located in photoreceptor outer segment. Is expressed in several structures, including digestive system; endocrine system; photoreceptor cell; presumptive neural retina; and visual system. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in congenital stationary night blindness autosomal dominant 1; fundus albipunctatus; night blindness; retinitis pigmentosa; and retinitis pigmentosa 4. Orthologous to human RHO (rhodopsin).

GO:

id name namespace
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
K04250 RHO, OPN2; rhodopsin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_01447924_01453746.mRNA True 1657 mRNA 0.50 5 1447422 1453836

Neighbor

gene id symbol gene type direction distance location
CI01000050_01319798_01336147 NA coding downstream 110726 1319090 ~ 1336696 (-)
CI01000050_01118519_01162499 CACNA2D3A coding downstream 284923 1118519 ~ 1162499 (-)
CI01000050_00849460_00849759 NA coding downstream 597128 849016 ~ 850294 (-)
CI01000050_00793175_00797131 NA coding downstream 649052 793075 ~ 798370 (-)
CI01000050_00786890_00789088 NA coding downstream 658334 786634 ~ 789088 (-)
CI01000050_01513337_01523389 GNB4, GNB1, GNB2, GNB1.S, OL-GB1, GNB1A, GNB1B coding upstream 58990 1512826 ~ 1523632 (-)
CI01000050_01563629_01592766 CFAP74 coding upstream 109619 1563455 ~ 1593012 (-)
CI01000050_01596404_01631248 NA coding upstream 142450 1596286 ~ 1631248 (-)
CI01000050_01715475_01720169 MRPS25 coding upstream 261232 1715068 ~ 1720943 (-)
CI01000050_01725724_01732620 NA coding upstream 271873 1725709 ~ 1733001 (-)
G213644 NA non-coding downstream 22527 1415114 ~ 1424895 (-)
G213663 NA non-coding downstream 52377 1393013 ~ 1395045 (-)
G213645 NA non-coding downstream 88437 1349020 ~ 1358985 (-)
G213606 NA non-coding downstream 166131 1248738 ~ 1281291 (-)
G213516 NA non-coding downstream 330973 1115973 ~ 1116449 (-)
G213750 NA non-coding upstream 8623 1462459 ~ 1463630 (-)
G213760 NA non-coding upstream 107396 1561232 ~ 1561641 (-)
G213791 NA non-coding upstream 183993 1637829 ~ 1638187 (-)
G213630 NA non-coding upstream 196978 1650814 ~ 1661180 (-)
G213801 NA non-coding upstream 207404 1661240 ~ 1661582 (-)
G213704 NA other downstream 130316 1312983 ~ 1317106 (-)
G213497 NA other downstream 451763 983478 ~ 996539 (-)
G213429 NA other downstream 617620 829342 ~ 829802 (-)
G213174 NA other downstream 1194360 235551 ~ 253062 (-)
G213171 NA other downstream 1429441 16080 ~ 17981 (-)
CI01000050_02230904_02233429 NA other upstream 778812 2228865 ~ 2233429 (-)
G213948 NA other upstream 874677 2328513 ~ 2331316 (-)
G214017 NA other upstream 1008340 2462176 ~ 2464698 (-)
G214027 NA other upstream 1103330 2557166 ~ 2572902 (-)
G214314 NA other upstream 1959612 3413448 ~ 3424257 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038471 RHO coding NW_003337228.1 KN150086.1 21 ~ 1638 (-)