CI01000050_01563629_01592766 (CFAP74)


Basic Information

Item Value
gene id CI01000050_01563629_01592766
gene name CFAP74
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1563455 ~ 1593012 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_01563629_01592766.mRNA
AGATTGATCTATTTCTTATATAAAATTACCACTTTGTTCATTTAATTGCAATTTGCAATGTTTTATTTATGCAAATTCACCTGTGGATGGAGGTACAAGCTTTCAGGGTCAGTGAAGACAGCGCTTCACTGAGCGATTGCCCTGTGGCTGATCTTGGCAATGACAAGAATACTGAGTAATGAGGTTCACAGTGCTGCCAGTATCCCAGAGTGCAAAGTGGAAACTGCACTTTAGTGACATTTACCAATGAAGCGGTGGTTTACTCTTTACTACACAAAAGGGAAAATGGTGACATGGGTGCTTAACAACATTGCAGAGCAGGTGGTAGCATACATGGGTGTCAGAGAACAGAGCTTGTTTTCGGATGCCAAAAGCTTCTTCAATAAGGACACAGGAGTTCTGGAGGTTCCCCTGACTGTACAGGTGGCAGATCAGGTGAGGCCTGTCCTGTTTACGGTCCATGCAGTGGTCACCAGCTCCGACCTGCTGTTTGACCACACTGAGGTGGACTTTGGACACTGCTCCGTATATGAGTCCTCCCAGACTTCAGTGCGTCTCACCAACTGTTCCTTGTTGCCGCAGGAGTTTGGCTTTGTGGGTATTCCCAAGTTTATTGATGTCCAGCCTAATGACGGTTTTGGCACTTTGCTGCCTTCACAAAGCATGGACATTTACTTGATCTTCAGCGCGTCAAAGGCAGGGGAATACAACTTCACACTCACCTGTAAAACAAGCATTAACAGAGACTTCCTGTTATCTTGTCACGCGACTGGCGTCCAGCCTTCTCTGAAACTCTCTGATTGTTTGGTTGAGTTTGGAGGGACGGCGCTGGGCGACCGGACCACTGCAGTACTGTATGTGGAGAACCAGATCAGCTCAGGGCCTGAGGCTGCGGCCCGGCTCTTCGCCTTCTCTGTTCCTGAAAACTCTGACATCACCATCACACCTGCTTCAGGACGTGTACTGCCTGGACAGAGGTGTCTGGTCCAGGTTACGTTCAGCCCAACACTGTCTGATGATGTGATCAAAGCACAGGCTGTTCGCCGGAGGAACGAGTTTCACACTAACACCAGCAGCTGCCAACATACACAACCTGACAGCAAAAGTAAAATGGAAACTCCGTTGCTTTTGGTAAAAGATCAAGGCAGCAAAGTGACGCCTGCAAACAGCAGCACCGTCCGCTCCCCGAGCCCAGCAGACGTTCAAGCAGGCTCTGTTGAATATTTGGCTGCGAAGGCCTCACTCCTGCGCTCTTTTACTGAGCGTCGCACTCGCCATGTCATATCCTGCTTCACCTCTACATCAGACACGTCAGAGGAGCCCAGATACAGCCCACATGAGACGCTGTATCTGGAGTTACACTGTCCAGCCGTCAGACCAGCTCTACTGCTCATCTCTGACAGCCACACCATCCACTTCAGTCAGGTGGCAGTAGGTCAGAAGGTGTTGAAAAAGGTGATCATCCAGAACATTTCCTCAGAGTTTGTAAAGCTGACATCATCACTGCTGGATGTGAACGGGCCGTTTTCTGTGCTGAACGCCATGCGTCCCTTCGGTCCTGAAGACACACACGTGCTCCTGATCGCATTTACACCCTCTGTGGCCAAGAAGTATTATGAAACTCTGGAGGTGAGCTGCAGTCAGATGTCGCTGGAGATCGCTCTCTGTGCTGAAGCTGTCAATCCCATCATCACCTGCTCACATGAAGGACACGTTGACTTTGACTACGTTCCTGAAAACGAGAGCGCCTCACAAGTGTTCAGGCTGCAGAACCTGTCCTCTCTGGATGTGCACTTCAGTGTGCTGTTAGACAGCCAGCGTCTCACAGAAGTCATGGACTCCACAGCACATGTGGGTGGAGCCATTTCTCCTGCCGCTGCTGCTGACATTACTGTGACCTTCCATCCCGATCATGAGAGTCTCCATTACAGAGATGTTCTGAGAGTGAAACTCCTGAACAAACAAACGGTGTGTGTGCTGGAGCTCAGGGGCTCTTCATGTCGACACAATATGTTTGTCTGTGGTGGGGATCCGGTAGAGGACTGTTCTGAATCACTCATCCCATCACATATATACACATCAGGGCATCAAGACAGCAGGAGTTTGCTGCTGACTTTTAGGAGTGAATATCAGGAGGGCAGAGCAATCACAGCCACACGCAAACTCCATGTGGGATGTGTCCTCGGCTCAAAACCGGCCACAAAAAAAACGGTTGAGTTTATCTGGGAGAATCTCTCACCTGTGGAGCAGCAGGGCTTCAGAGTCACACCAATGCAAGGAAGTGTGGATGCAGGACACAGACGTCCCGTCACCATCACCTGGATGCCATCTAGTGGCCTCGCTCCGAACGCAGTGGTTCAAGCGTGTGCTCTGCTGACCGTCAGAGGAGACGAGACCGCCGTTTACCGCGTCACTCTGATGGCCCATACAGACAAAACTACAGCCACTTAGAATTTCATTCAAAATGTGTCATTATTTATTATTATGTAATTCACTGTTACTGAACCCTGATATTTCAATCTAGTTGAAGACATCTTTTTGGTCATTATTGATTTGATATGAGTTTATGCTCTGTGTAAAAGGTGAATATGGTTTCTGAATTGCAATACGCTGTGCAACAATAAA

Function

symbol description
cfap74 Orthologous to human CFAP74 (cilia and flagella associated protein 74).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_01563629_01592766.mRNA True 2625 mRNA 0.49 18 1563455 1593012

Neighbor

gene id symbol gene type direction distance location
CI01000050_01513337_01523389 GNB4, GNB1, GNB2, GNB1.S, OL-GB1, GNB1A, GNB1B coding downstream 39823 1512826 ~ 1523632 (-)
CI01000050_01447924_01453746 EXORH, RHO coding downstream 109619 1447422 ~ 1453836 (-)
CI01000050_01319798_01336147 NA coding downstream 226759 1319090 ~ 1336696 (-)
CI01000050_01118519_01162499 CACNA2D3A coding downstream 400956 1118519 ~ 1162499 (-)
CI01000050_00849460_00849759 NA coding downstream 713161 849016 ~ 850294 (-)
CI01000050_01596404_01631248 NA coding upstream 3274 1596286 ~ 1631248 (-)
CI01000050_01715475_01720169 MRPS25 coding upstream 122056 1715068 ~ 1720943 (-)
CI01000050_01725724_01732620 NA coding upstream 132697 1725709 ~ 1733001 (-)
CI01000050_01739921_01780306 NR2C2 coding upstream 146688 1739700 ~ 1780306 (-)
CI01000050_01820586_01825230 FGF17 coding upstream 227321 1820333 ~ 1826726 (-)
G213760 NA non-coding downstream 1814 1561232 ~ 1561641 (-)
G213750 NA non-coding downstream 99825 1462459 ~ 1463630 (-)
G213644 NA non-coding downstream 138560 1415114 ~ 1424895 (-)
G213663 NA non-coding downstream 168410 1393013 ~ 1395045 (-)
G213645 NA non-coding downstream 204470 1349020 ~ 1358985 (-)
G213791 NA non-coding upstream 44817 1637829 ~ 1638187 (-)
G213630 NA non-coding upstream 57802 1650814 ~ 1661180 (-)
G213801 NA non-coding upstream 68228 1661240 ~ 1661582 (-)
G213649 NA non-coding upstream 69203 1662215 ~ 1663376 (-)
G213802 NA non-coding upstream 72747 1665759 ~ 1666041 (-)
G213704 NA other downstream 246349 1312983 ~ 1317106 (-)
G213497 NA other downstream 567796 983478 ~ 996539 (-)
G213429 NA other downstream 733653 829342 ~ 829802 (-)
G213174 NA other downstream 1310393 235551 ~ 253062 (-)
G213171 NA other downstream 1545474 16080 ~ 17981 (-)
CI01000050_02230904_02233429 NA other upstream 639636 2228865 ~ 2233429 (-)
G213948 NA other upstream 735501 2328513 ~ 2331316 (-)
G214017 NA other upstream 869164 2462176 ~ 2464698 (-)
G214027 NA other upstream 964154 2557166 ~ 2572902 (-)
G214314 NA other upstream 1820436 3413448 ~ 3424257 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location