G213649


Basic Information

Item Value
gene id G213649
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1662215 ~ 1663376 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU242381
CCATTTTGGCAGGCCATCAGGAGAGCACTAGTGCGGCTGTAGCATTGGTATCGATAGTGGTCAAACAATAATTTAAAACCAGACATGTTTAGACCTTACAAACCTTACTATTTCAACATGGTGGACAGCTGCTGTGTGCCAGGATGCCAGAACAGGCGGGGGAAAGCAAAGGGGAAATCATTTTATCATATTCCTAATAATCCCGATAGATGACTGAAATGGTTCACTGCAATAAAACGTGCTAACCAACACAACAAAACAACAGATGGTTGTATTTATGTTTAATAGTAACCCTAAAATGATATGAAAGAGTTTAAAATGTGTTAAATAACTGGGCTGACAGACTATATAAGAATTTTCAGTATAACGTACACATTATTCCACCGGTCACAATTGTGGCCGAACATAAAACACAATTTTTTCACACACATTTCCATAAAAATTTCAAAAAATAATTATTGATTATTTCAAGGGGCAACTAATGACACCTCATTTGGATATTTTTATGTCAGAAAAGCTATCCGTTCCTTTATCGATACACGTTAAAAGCACCCCGGGGGCATTATAGGGATCTGTTATGTTTAATCTATTATGTTTTGCCATGTACACGTCTATGTTTTTTTAATTAAAGTGCGCAGTGAACTCTGTTGCCTTGAAACTGATGCTGGCGCCATTCATTTCATATTCGCTCCCAGCTGTCCCTGCCTGCCAGCATGGTGGTGTAAACAGAATGGGTCACGTGACTACCGGAGCTCTATAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU242381 True 760 lncRNA 0.39 3 1662215 1663376

Neighbor

gene id symbol gene type direction distance location
CI01000050_01596404_01631248 NA coding downstream 30967 1596286 ~ 1631248 (-)
CI01000050_01563629_01592766 CFAP74 coding downstream 69203 1563455 ~ 1593012 (-)
CI01000050_01513337_01523389 GNB4, GNB1, GNB2, GNB1.S, OL-GB1, GNB1A, GNB1B coding downstream 138583 1512826 ~ 1523632 (-)
CI01000050_01447924_01453746 EXORH, RHO coding downstream 208379 1447422 ~ 1453836 (-)
CI01000050_01319798_01336147 NA coding downstream 325519 1319090 ~ 1336696 (-)
CI01000050_01715475_01720169 MRPS25 coding upstream 51692 1715068 ~ 1720943 (-)
CI01000050_01725724_01732620 NA coding upstream 62333 1725709 ~ 1733001 (-)
CI01000050_01739921_01780306 NR2C2 coding upstream 76324 1739700 ~ 1780306 (-)
CI01000050_01820586_01825230 FGF17 coding upstream 156957 1820333 ~ 1826726 (-)
CI01000050_01909688_01930238 NR5A1A coding upstream 245605 1908981 ~ 1930578 (-)
G213801 NA non-coding downstream 633 1661240 ~ 1661582 (-)
G213630 NA non-coding downstream 1035 1650814 ~ 1661180 (-)
G213791 NA non-coding downstream 24028 1637829 ~ 1638187 (-)
G213760 NA non-coding downstream 100574 1561232 ~ 1561641 (-)
G213750 NA non-coding downstream 198585 1462459 ~ 1463630 (-)
G213802 NA non-coding upstream 2383 1665759 ~ 1666041 (-)
G213803 NA non-coding upstream 5824 1669200 ~ 1669426 (-)
G213676 NA non-coding upstream 17130 1680506 ~ 1681137 (-)
G213688 NA non-coding upstream 18031 1681407 ~ 1682217 (-)
G213647 NA non-coding upstream 37625 1701001 ~ 1701932 (-)
G213704 NA other downstream 345109 1312983 ~ 1317106 (-)
G213497 NA other downstream 666556 983478 ~ 996539 (-)
G213429 NA other downstream 832413 829342 ~ 829802 (-)
G213174 NA other downstream 1409153 235551 ~ 253062 (-)
G213171 NA other downstream 1644234 16080 ~ 17981 (-)
CI01000050_02230904_02233429 NA other upstream 569272 2228865 ~ 2233429 (-)
G213948 NA other upstream 665137 2328513 ~ 2331316 (-)
G214017 NA other upstream 798800 2462176 ~ 2464698 (-)
G214027 NA other upstream 893790 2557166 ~ 2572902 (-)
G214314 NA other upstream 1750072 3413448 ~ 3424257 (-)

Expression


Co-expression Network