AMCG00006895 (LOC107732972)


Basic Information

Item Value
gene id AMCG00006895
gene name LOC107732972
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24684008 ~ 24715289 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006895
CACTATTTTTGTGATGCATGGAATACATTTGACGCCTTAATTGTTGTTGGTAGCGTTGTTGATATAGCTATCACTGAGGTGAACGCTGTTGTCTTCAGAGTGTTGATGTTTGCCATAATTTCTTGTTTGGTAACTcgttatgtgtgtatatataacaaaaaaaagggaCTCCAGAACACAGAAGACAATGCCAGGATCTCCATTACCTTCTTCCGACTATTCCGGGTGATGAGGTTGGTGAAGCTCCTGTCTCGGGGGGAGGGGATACGGACATTGTTGTGGACTTTCATCAAGTCCTTTCAGGCTCTGCCATACGTAGCCCTTCTAATCGTGATGCTGTTTTTCATCTATGCTGTGATTGGAATGCAGATGTTTGGTAAAATTGCCCTAAGAGACCAGAGTCAAATCAACCGGAACAACAACTTTCAAACTTTCCCTCAGGCTGTGCTCCTACTGTTCAGGTGTGCAACAGGAGAAGCCTGGCAGGAGATCATGCTGGACTGTATTCCCCCACAGCCCTGTGAGACCGGCTCGGAAACGGGGCATGCCAGCGAGGATGAGAACTGTGGGAGCATTTTCACCATCTTTTACTTCGTCAGCTTCTATATGCTCTGTGCCTTCTTGATCATTAACCTCTTTGTTGCTGTCATCATGGACAACTTTGACTACCTGACCCGAGACTGGTCCATTCTAGGGCCACACCACCTGGACGAGTTCAAGAGAATCTGGGCAGAATATGACCCAGAAGCCAAGGGAAGAATCAAGCACCTAGACGTAGTGACTCTGCTGCGGAGAATCCAGCCCCCGTTGGGTTTTGGCAAGCTCTGTCCCCATCGTGTGGCCTGCAAGAGGCTGGTGTCTATGAATATGCCTCTCAACAGTGATGGTACTGTCATGTTCAATGCCACTCTGTTTGCTCTGGTTCGAACAGCATTACGGATCAAAACTGAAGgtaACCTGGAGCAAGCCAACGAGGAGCTCCGGGCCATCGTGAAGAAGATTTGGAAGAGGACCAGCATGAAACTACTAGACCAAGTGGTACCACCAGCAGGAGATGATGAGGTCACTGTGGGGAAGTTCTATGCCACCTTCCTGATTCAGGAGTATTTCAGGAAGTTTAAGAAGCGCAAGGAGCAGGGCTTGGTGGGCAAACCTGCCCCAAAGACAGCTCTGTCATTGCAGGCTGGCCTGCGAACTCTTCACGACATCGGGCCCGAGATCCGGAGGGCAATATCAGGGGACCTCACTGtagaggaggagctggagaaagCCATGAAGGAGACCGCTTCATCTGCCTCAGAAGATGACATATTCAGGAGAGCAGGTGGCTTGTTCGGTAACCACGTCAACTACTATCAGAGTGATGGGCGAAACACTTTCCCTCAGTCCTTCACAACCCAGCGTCCTTTGCACATTAACAAGGCAGGGAGCAGCCCAGGGGATGTGGAGTCTCCCTCTCATGAGAAGCTGGTGGACTCCACTTTCACACCTAGCAGCTATTCTTCCTCAGGCTCCAATGCCAACATCAACAATGCCAACAATACTGCCATAGGTCGTTTCCCCAACCCTGCCATCTACCAGAGCACTATCAGCACCGTAGAAGGACAGAGCACCCCGCTCACACCCAACGTCCTGCCCCGTGCTGCAGCCTGGCAGCTCAGTGCTAAGAGTTCTGACTCAGGGGATAGCCGTCTGCCCATCATTCGTCGTGAGGAGGTGTCCCCCGATGAGACGTATGATGAGAACTTTGCAGATGATCAAGAGTACTGCAGCGAGCAGAGCATGCTCTCCTCTGAAATGCTGGCGTATCAGGATGAGGAGAACAAGCAGCTGACACCTatgaaggagggagagggcaATGAGGAAAGGAAGCCCTGGCAGTCCCCAAAGCGAGCCTTCTTGTGCCCAACAGCACTAGGTCGAAGATCATCCTTCCACCTGGAGTGCTTAAAGAGACAGACGAGACAACAAGCAGATGTCTCTCAGAAAACTGCATTACCCCTGCATTTAGTACATCACCAGGCTCTTGCGGTGGCAGGACTCAGCCCACTGTTGCGGAGGAGTCACTCCCCAACACTCTTCACCAGGCTGTGCTCCACACCCCCTGCTACGCCCTGTGCCCGAGGACACTCCTACCAGCGTGTGCCCACTCTGCAGCTGGAGGGGCCCAGTTCCTACGAGAAGCTCAACAGCAGCCTGCCGTCGGTGAACTGCGGCTCCTGGTACGCTGACAGCGCCAACAGCAACAGCCAGCGGGTACGGCCGGTCTCGCTCACCGTGCCCGCCCAGTGCCAGGATGTGGGGCGGCAGTGCCATGGCAGCGCGGGCAGCTTGGTGGAGGCGGTCCTCATTTCCGAAGGGCTCGGTCGTTATGCCCAGGACCCCAGCTTCATCGAGGTGACCAAGCAAGAGATCGCAGACGCCTGTGACATGACGATAGAGGAGATGGAGAACGCGGCCGACAACATCCTGAATGGCAACAGCCAGCCCAGCCCCAACGGCAACCTCCTTCCCTCCTTTACTAACTGCAGGGACCACGAAACTCAGGAGTCCAGCAGGCCAGAGGGacctgtggtggtggtggaagAAGACAAGGAGGACACCGAGATGGAGGTTGAGCAGGCTGAAGGGCAACGGGATTGTGGGCTAGTGGAGGAGGACCTCCAGGAAGACATGGTTTGCATCAGCAGCTTGTAG

Function

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1C-like isoform X11

GO:

id name namespace
GO:0070509 calcium ion import biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0003007 heart morphogenesis biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006895 True 2697 mRNA 0.53 17 24684008 24715289

Neighbor

gene id symbol gene type direction distance location
AMCG00006890 NA coding downstream 244510 24421102 ~ 24439498 (-)
AMCG00006891 NA coding downstream 276790 24388630 ~ 24407218 (-)
AMCG00006889 LOC107707394 coding downstream 295381 24377799 ~ 24388627 (-)
AMCG00006886 fgf6,LOC106573196,LOC105018229,LOC106609473 coding downstream 316072 24359181 ~ 24367936 (-)
AMCG00006887 NA coding downstream 326228 24353437 ~ 24357780 (-)
AMCG00006896 cacna1c,LOC106515158,LOC101471946 coding upstream 11203 24726492 ~ 24755821 (-)
AMCG00006897 LOC107590584,LOC107732972 coding upstream 69309 24784598 ~ 24805892 (-)
AMCG00006900 LOC106609805 coding upstream 246885 24962174 ~ 24969473 (-)
AMCG00006902 NA coding upstream 416523 25131812 ~ 25145341 (-)
AMCG00006904 adipor2,LOC107726009,LOC105910465 coding upstream 527265 25242554 ~ 25258567 (-)
G113301 NA non-coding downstream 10510 24671788 ~ 24673498 (-)
G113225 NA non-coding downstream 308079 24373692 ~ 24375929 (-)
G113212 NA non-coding downstream 348094 24331087 ~ 24335914 (-)
G113209 NA non-coding downstream 362146 24315732 ~ 24321862 (-)
G113066 hipk2 non-coding downstream 1129269 23547797 ~ 23554739 (-)
G113374 NA non-coding upstream 676507 25391796 ~ 25392318 (-)
G113375 NA non-coding upstream 680247 25395536 ~ 25398698 (-)
G113389 NA non-coding upstream 1001236 25716525 ~ 25716987 (-)
G113390 NA non-coding upstream 1003128 25718417 ~ 25718792 (-)
G113391 NA non-coding upstream 1004073 25719362 ~ 25719575 (-)
AMCG00006866 NA other downstream 1112875 23568155 ~ 23571133 (-)
G113050 NA other downstream 1276801 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 1725702 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 2486344 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 3719446 20854057 ~ 20964562 (-)
G113530 NA other upstream 1784726 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 2687311 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 3551973 28267262 ~ 28292598 (-)
G113833 NA other upstream 3995930 28711219 ~ 28812548 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027304 cacna1c coding NC_007115.7 CM002888.2 20318127 ~ 20474972 (+)
grasscarp (Ctenopharyngodon idella) CI01000050_00302983_00357876 CACNA1DB, CACNA1D coding CI01000050 null 302983 ~ 358292 (+)