AMCG00006890


Basic Information

Item Value
gene id AMCG00006890
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24421102 ~ 24439498 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006890
ATGTGCTATTCAGAAACTACAGGTTCATCAGCTGATGAAGTCACAGGTCCGCAGCCCGCAATGAAGAAGAACAAGGCCAAAGTGTCGAGCACAGAAAAGCAGTTCGAGTTCCACTTCCACGCCGGGCGCCAGGCGTGCGCTCTCACCGTGCCTGTGAGGTTCCCCATGGAGGAAAACGTCAGTGATCTGCATgggaggctgctgctgctgcacagacTACCTTGTTTCGTCGAAAATGATTTAAGGAGTGCCCTCTGCAAGTTTATCGATGAAGAATCCATTAAGGACTATGACCAAGAAGCTGAGTTATCCTTGGAAAGACTCAGGACGGGGGAAGTGGACATTGAACTACTAACTAGTGCTTGGTCAAAGGCGTATGCTGAAACAACTCTAGAGCATGCTAGGCCTGAGGAGCCCAACTGGGACGAAGATTTTGCTGATGTTTACCATGACCTGATCCACTCTCCAGCCTCAGAGACTCTGCTCAACCTGgaacacaattattttgtcaGCATCTCAGAACTCATCAGCGAGAGAGACATGGAGTTAAAGAAATTACAGGAAAGGCAATCAGTAGAAATGGATAAAGTGATGCAGGAGCTGGGGAAGACGATGAGTGACCAGGATGTGAATGCAGTTGCCTCTCAGCATTTTGATGCCCAACAGgttttagaaaataaatgggCCAATGAGCTGAAACAGGTGACAACAATCCAGAAGCAAGAATACCAGGAATGGGTGATGAAACTGCATCAAGACTTGCAGAACCCCAACAACAGTGCCATTAATGAGGAAATTAAAGTGCAACCGAGCCAGCTGCGGGAATCTCAGGAAGCCAGTGACCGACTGTTTGAAGAGCAGAGGCAACTAGAAGAGAGCTTCACCATCCACTTAGGCGCCCAGTTAAAGACGATGCATAATCTCCGTCTCGTCCGGGCGGACGTGCTGGACTTCTGTCAGCACAAGCAGCACCAGCGCAGCGGGGTGAAGCTGCAGCGGCTGCAGACAGCACTCTCGCTCTACTCGTCCTCTCTGTGCGGCCTGGTGCTGCTGGTGGACAACCGCATCAACTCCTACAGTGGAATCAAGAGAGATTTTGCCACTGTGTCTCAAGAGTGCACTGACTTCCACTTCCCTCGCTTGGAGGAGCAGCTGGAGGTGGTCCAGCAGGTGGTGCTGTATGCCCGAGCACAGAGGAACAGCAAGTTGAAGGACCAGCCTGaTGTTCCCAGAAATGGTAGCTGTGAGGATAAGTCCAAAAACCTTGAAAGAAATCCTTCAAATATTCTCCCAgGTGAATTCTACATCTCCCGCCACTCCAATCTCTCTGAGGTGCACATTGTCTTCCATCTTTGTGTGGATGACAACGAAATGACCATACCTTGGTGCCTGAAACGTGCAGAATTAGTTTTCAAATGTGTGAAAGGCTTTATGATGGAAATGGCATCCTGGGATGGGGGGATTTCACGAACAGTCCAGTTCCTTGTTCCACAGGTAGGGTGTCCCGTTGTCACTTATATTGGTTGA

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors
ko03420 Nucleotide excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006890 True 1527 mRNA 0.50 13 24421102 24439498

Neighbor

gene id symbol gene type direction distance location
AMCG00006891 NA coding downstream 13884 24388630 ~ 24407218 (-)
AMCG00006889 LOC107707394 coding downstream 32475 24377799 ~ 24388627 (-)
AMCG00006886 fgf6,LOC106573196,LOC105018229,LOC106609473 coding downstream 53166 24359181 ~ 24367936 (-)
AMCG00006887 NA coding downstream 63322 24353437 ~ 24357780 (-)
AMCG00006883 NA coding downstream 363277 24041077 ~ 24057825 (-)
AMCG00006895 LOC107732972 coding upstream 244510 24684008 ~ 24715289 (-)
AMCG00006896 cacna1c,LOC106515158,LOC101471946 coding upstream 286994 24726492 ~ 24755821 (-)
AMCG00006897 LOC107590584,LOC107732972 coding upstream 345100 24784598 ~ 24805892 (-)
AMCG00006900 LOC106609805 coding upstream 522676 24962174 ~ 24969473 (-)
AMCG00006902 NA coding upstream 692314 25131812 ~ 25145341 (-)
G113225 NA non-coding downstream 45173 24373692 ~ 24375929 (-)
G113212 NA non-coding downstream 85188 24331087 ~ 24335914 (-)
G113209 NA non-coding downstream 99240 24315732 ~ 24321862 (-)
G113066 hipk2 non-coding downstream 866363 23547797 ~ 23554739 (-)
G113014 NA non-coding downstream 1097951 23322933 ~ 23323151 (-)
G113301 NA non-coding upstream 232290 24671788 ~ 24673498 (-)
G113374 NA non-coding upstream 952298 25391796 ~ 25392318 (-)
G113375 NA non-coding upstream 956038 25395536 ~ 25398698 (-)
G113389 NA non-coding upstream 1277027 25716525 ~ 25716987 (-)
G113390 NA non-coding upstream 1278919 25718417 ~ 25718792 (-)
AMCG00006866 NA other downstream 849969 23568155 ~ 23571133 (-)
G113050 NA other downstream 1013895 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 1462796 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 2223438 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 3456540 20854057 ~ 20964562 (-)
G113530 NA other upstream 2060517 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 2963102 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 3827764 28267262 ~ 28292598 (-)
G113833 NA other upstream 4271721 28711219 ~ 28812548 (-)

Expression


Co-expression Network