AMCG00006854


Basic Information

Item Value
gene id AMCG00006854
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22953176 ~ 22958306 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006854
GGCAGCACAGAGAAGCAACAGGACTCTGCTTCTCCGACACTTTGGCGAGCTGGGGAGCCGCAGGGACGAGGAGAGGACCATGCACTTCCCAATCAACGTGCTCTTCTACTCCGCAGGCATGCGCAATTTCACTGATCTTGATAACCAGTCCCTGCAGGTGAGCGCCAAAGACGAGCCCCTGATCAGCAACCGCAGTGGTGCCAAAAATGAAAGCGACGACACCTATGGGAGAGACGAATATGTGGCCAAACTGGAGATTACACTCCTCGGCATCACCTTTCTGGTGGCGGTCATCGGAAACCTGAGCGTCTTCTTGGCGCTGTACAAGACCAAGAAGAAGATGTCCCGGATGCACCTTTTCATTAAGCACCTGAGCCTGGCCGATCTCGTCGTGGCGTTTTTCCAGGTGCTCCCGCAACTCTGCTGGGAAGTGACCTTTCGCTTTTACGGGCCAGATTTCCTCTGCAGAATTGTGAAGCACCTGCAAGTTTTAGGCATGTTTGCCTCGACCTACATGATGGTCATGATGACTTTGGACCGCTACATAGCCATCTGCCACCCGCTGAAGACACTGCAGCAGCCCACCCAAAGATCCTACTGGATGATCATCAGCACCTGGGTGTGCAGTCTGGTGCTCAGCACTCCGCAGTATTTCATCTTCTCCTTGAGCGAGATCCACAATGGCTCGGGCGTCTATGACTGTTGGGGACACTTCATCCAACCATGGGGTGTCAAGGCGTACGTCACATGGATGACCCTCGGTATCTTCCTCGTCCCCGTGGTCATCCTCATGGTGTGCTATGGCTTCATCTGCTACAGCATCTGGCAGAACATCAAGTACAAGACTCAGAAGAACGCCGGGGAAACTGCGTCCAAGAACGGAATGATGGTCCCATCTTCTGTGAGCAGCATCAGGACTATTTCCAGAGCCAAGCTGAGGACGGTGAAAATGACTTTTGTCATTGTGCTGGCTTACATTGTGTGCTGGTCTCCATTTTTCGTTGTGCAGATGTGGTCGGTCTGGGACGAAAACTTCAGCTGGCACGAGTCCGAGAACACGGCCGTGACGCTGACGGCGCTGCTCGCCAGCCTGAACAGCTGCTGCAACCCGTGGATTTACATGATCTTCAGCGGGCACCTTTTGCAGGATTTTGCCAACTGCTTCCCCTGCAGCCGGCAGATGAGGCCGAGGTTTAAGAAGCAGGACTCGGACAGCAGCCTGCGCAGGAACACGCTCCTAACCAGGATCCACAACCGGAGTCCCGACTGCAGCATCGGGACCTGGAGGGACTACGACAACTCCCCCAAATCCTGCAGGTCCATCCCAGTTGAATCCTAAAGCAATCTCTcgaagtgtttatttattttgtatttatttatttaactgataTACACTTGCAAACCGACCGACTTTTAAAGATCGTAGAAATAGCCTCCCACGCCCccaaaggaaaaacacaatggGGGGAAAATTTCGTTTTATAAGGGATTACAGATAAAACAGTTGaacagtttaatgtatttaaagtgtcAGTACGTAGGAATGTATACATCATTCAACGAATTGTTACTAAATGGATTGTTTTCTTGTCCAATGTTGAAAGACCTGAAGTTTTCCACATATTAAGATGCAATTTAGTTGATAACTGATTGGACaaaaaattgaatacaaaaacatctgTAGCTCTGGAACTTTGCATTTGTGTTATTGGCTGTATTGTAACTTGATTTTACCTTTGACAACCTGCTACCTGTTACTGTCTTGTAAGTCAGATTCAGGTTTATCATGAGAATATGcacttgtttaatatttttttatttcttctcgcAAGGTATGCTTTAGAATTGCACAGCTGTTTTTTCTACTTCATTACCTGATATTGGTTTACTCTGTATATTCTATAAaacgttttcattttaaagtagcctatctaatatttaaattcacacaATATCCATTTGAACAGAAAATTATTGTATGTACctatttttcaaattaacatatatatatatatatatatatatatattcgatTCAAGAGAAAATGACAATTGTTACTTACTGGAGTACATACACAACTACCAGAGACACAGAAAATGTGGTAGCTATGCAAACACAAGTGAGGAAGAATGATGCGGAAAATAATACGACAACTGTGGTTGAAAGTCCAAAGTAAATACTTTATGAATAaaattccattattatttagcatAATGCAATATTTTCACCGAGGCAACTTCCAATCCCAAAACACGCAGCTGGACACATGTAAACCAGAAGAAATAGAGAAGTGCTGAAATAGATTTTTCTGCTTTCCCGAGTCACCTAAAATAAGcccaactgaaataaaatgtatgtatccaATACGTTATTAAGACTATATAAGTATAtggttaatatatattattaagacTATAAAGTCTTAATGGTTGTCTGAAGATTCATATTTACAGGGGAATACTTAAAATGAGCTTTAGTTTTGCACTCGATTTAATGTCTTAAATATAGTTATAGaaatccaaaaaaaaacagctcaacAGAGAGAactattttataatgaaataagCAAAGCTTCAAGAAagttttacttttcatttaataaaaccaTAAGTATTTAGAATGAAGATTTTCACCAGCTTATCTACATACCCTTGACAAAATAGTTTAATCAAATGTGAAAACGTTACTGGACCAGCAGAATTACTTATAAAACATTTCCTGTCCTActtgactgaaaacaaaataccaaattaattatctttaagTTTCTGCATCTTTCAAATTActtattacttttaaaacttaGTGTTATGACAGAAAGCAAAATTTATTGAGGAACAAAATGTCCAACATAACTCAAGATTGTGTGACTCATATGTGGAGgttaagtttgttttaattgctttatttgtttaatggttGCTATTTGCTTTGCAAGGGcctatttattgcattttagttGTAATCAGTGTGAGTAGAAAAAAGACTAACCaagaatggttttatttttaaaacactatgaTATGTTAAGGaagatttttacaaaatattttgtaaatgttattgtaTCAATCTGGCATTCATATTATCGCTTCATAACAAAAGGATACATTTagtaatatttgtgtatttacacaCTCTGTATTTAATTCCATCTCATCTTCATTAAGCCTCAAAAATACATCTTAATTGTTTACATAAACTGAAATTCCCACATGAGGTTATCGTGACctttcagaataaatattttgtgagAGTGAGTCTTACAAGTAATGTATTTCTCAATcactgacaaataaatcaaGCTTGTCATAATGAATATAAAAGGTCTATGCCATAGcgtagtattttgtttttaatttaattcaaaaattACTTTTTGTGGAGGAAATATGTCAGTTATCTGTTGTATCCCAAGTGAAAAGCTTGGGATACAATATCTTATTGCAAGATATTTTCtcgtattatatattttatggcATACAACTATTTTGTGTTGGTATGTTTTGCTCaaatttttgttacattttaaatatattgtatgtagcacatttgtttcttaatatcACCAGATAAGCATGTGTATTGCCAAAGATgattcagtgatttatttaactgtttagATGTTACCctaaatcctttttttattattatttgtccgTTATGAACTTATGAAACCTGAGAAAAGGGAGATATTAATTGtaaattgtcattgtttttaaaactggcATAGTTAAAAACTTTCTTTCTGAATATTTCTAGTATGCTAAAAGTTAAGGACATATGTACTGACATTTTTAGGGAGGTTGAAATATTTTATCAAGCATGAAAATCTAATGCACTACACATTATAGGACCATGCAAATATTTTTGTAGGTAAATAtttctgaagaaataaaaatatattggaaatacatgtttaaataaatgcattgctaCAGCTTTTACA
>TU141483
ACAATTGTTACTTACTGGAGTACATACACAACTACCAGAGACACAGAAAATGTGGTAGCTATGCAAACACAAGTGAGGAAGAATGATGCGGAAAATAATACGACAACTGTGGTTGAAAGTCCAAAGTAAATACTTTATGAATAaaattccattattatttagcatAATGCAATATTTTCACCGAGGCAACTTCCAATCCCAAAACACGCAGCTGGACACATGTAAACCAGAAGAAATAGAGAAGTGCTGAAATAGATTTTTCTGCTTTCCCGAGTCACCTAAAATAAGcccaactgaaataaaatgtatgtatccaATACGTTATTAAGACTATATAAGTATAtggttaatatatattattaagacTATAAAGTCTTAATGGTTGTCTGAAGATTCATATTTACAGGGGAATACTTAAAATGAGCTTTAGTTTTGCACTCGATTTAATGTCTTAAATATAGTTATAGaaatccaaaaaaaaacagctcaacAGAGAGAactattttataatgaaataagCAAAGCTTCAAGAAagttttacttttcatttaataaaaccaTAAGTATTTAGAATGAAGATTTTCACCAGCTTATCTACATACCCTTGACAAAATAGTTTAATCAAATGTGAAAACGTTACTGGACCAGCAGAATTACTTATAAAACATTTCCTGTCCTActtgactgaaaacaaaataccaaattaattatctttaagTTTCTGCATCTTTCAAATTActtattacttttaaaacttaGTGTTATGACAGAAAGCAAAATTTATTGAGGAACAAAATGTCCAACATAACTCAAGATTGTGTGACTCATATGTGGAGgttaagtttgttttaattgctttatttgtttaatggttGCTATTTGCTTTGCAAGGGcctatttattgcattttagttGTAATCAGTGTGAGTAGAAAAAAGACTAACCaagaatggttttatttttaaaacactatgaTATGTTAAGGaagatttttacaaaatattttgtaaatgttattgtaTCAATCTGGCATTCATATTATCGCTTCATAACAAAAGGATACATTTagtaatatttgtgtatttacacaCTCTGTATTTAATTCCATCTCATCTTCATTAAGCCTCAAAAATACATCTTAATTGTTTACATAAACTGAAATTCCCACATGAGGTTATCGTGACctttcagaataaatattttgtgagAGTGAGTCTTACAAGTAATGTATTTCTCAATcactgacaaataaatcaaGCTTGTCATAATGAATATAAAAGGTCTATGCCATAGcgtagtattttgtttttaatttaattcaaaaattACTTTTTGTGGAGGAAATATGTCAGTTATCTGTTGTATCCCAAGTGAAAAGCTTGGGATACAATATCTTATTGCAAGATATTTTCtcgtattatatattttatggcATACAACTATTTTGTGTTGGTATGTTTTGCTCaaatttttgttacattttaaatatattgtatgtagcacatttgtttcttaatatcACCAGATAAGCATGTGTATTGCCAAAGATgattcagtgatttatttaactgtttagATGTTACCctaaatcctttttttattattatttgtccgTTATGAACTTATGAAACCTGAGAAAAGGGAGATATTAATTGtaaattgtcattgtttttaaaactggcATAGTTAAAAACTTTCTTTCTGAATATTTCTAGTATGCTAAAAGTTAAGGACATATGTACTGACATTTTTAGGGAGGTTGAAATATTTTATCAAGCATGAAAATCTAATGCACTACACATTATAGGACCATGCAAATATTTTTGTAGGTAAATAtttctgaagaaataaaaatatattggaaatacatgtttaaataaatgcattgctaCA

Function

GO: NA

KEGG:

id description
K04226 AVPR1A; arginine vasopressin receptor 1A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006854 True 3949 mRNA 0.38 2 22953176 22958306
TU141483 False 1893 lncRNA 0.29 1 22953185 22955077

Neighbor

gene id symbol gene type direction distance location
AMCG00006855 NA coding downstream 24771 22881514 ~ 22928405 (-)
AMCG00006847 NA coding downstream 301659 22626401 ~ 22651517 (-)
AMCG00006846 NA coding downstream 345793 22592099 ~ 22607383 (-)
AMCG00006848 NA coding downstream 363438 22587660 ~ 22589738 (-)
AMCG00006845 NA coding downstream 409773 22534401 ~ 22543403 (-)
AMCG00006862 si:ch211-125a15.1,LOC107743608,LOC107726025,LOC107580661,LOC107592225,LOC107658829 coding upstream 328950 23287256 ~ 23302174 (-)
AMCG00006864 NA coding upstream 417061 23375367 ~ 23376805 (-)
AMCG00006873 LOC108429457,LOC107745572,LOC107549582,LOC105913374,LOC107669036 coding upstream 672733 23631039 ~ 23752269 (-)
AMCG00006876 LOC108429384,LOC108274557,LOC106584451 coding upstream 891339 23849645 ~ 23868247 (-)
AMCG00006877 NA coding upstream 940853 23899159 ~ 23899569 (-)
G112953 NA non-coding downstream 11506 22941459 ~ 22941670 (-)
G112903 NA non-coding downstream 180491 22766273 ~ 22772685 (-)
G112878 akr1d1,LOC106917221,LOC103465917,LOC103134490,LOC106953618 non-coding downstream 282293 22669860 ~ 22670883 (-)
G112809 NA non-coding downstream 695202 22257549 ~ 22257974 (-)
G112783 NA non-coding downstream 895040 22054622 ~ 22058136 (-)
G112979 NA non-coding upstream 195562 23153868 ~ 23154903 (-)
G113013 NA non-coding upstream 362771 23321077 ~ 23321771 (-)
G113014 NA non-coding upstream 364627 23322933 ~ 23323151 (-)
G113066 hipk2 non-coding upstream 589491 23547797 ~ 23554739 (-)
G113209 NA non-coding upstream 1357426 24315732 ~ 24321862 (-)
AMCG00006841 NA other downstream 755512 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 1988614 20854057 ~ 20964562 (-)
AMCG00006807 NA other downstream 2299517 20647320 ~ 20653659 (-)
G112420 NA other downstream 2716970 20235856 ~ 20236206 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 3317251 19633093 ~ 19635925 (-)
G113050 NA other upstream 445869 23404175 ~ 23407207 (-)
AMCG00006866 NA other upstream 609849 23568155 ~ 23571133 (-)
G113530 NA other upstream 3541709 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 4444294 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 5308956 28267262 ~ 28292598 (-)

Expression


Co-expression Network