AMCG00006896 (cacna1c,LOC106515158,LOC101471946)


Basic Information

Item Value
gene id AMCG00006896
gene name cacna1c,LOC106515158,LOC101471946
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24726492 ~ 24755821 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006896
TGAGCATGCCTACAAGTGAGACTGAGTCAGTAAACACAGACAACGTGCCTGGCGGGGAGATGGAAGGAGAGAACTGCTGTACCAGACTCGCaaATAGGATCTCCAAATCCAAGTTCAGTCGATACTCGCGGCGTTGGAACCGGTTTTGCCGGCGGAAGTGCCGAGCAGCAGTGAAATCCAACGTCTTCTACTGGCTGGTGATCTTCCTGGTGTTCCTGAACACGCTGACCATTGCCTCTGAGCACCACAACCAGGCTGTCTGGCTCACTGAGGTCCAAGACATCGCCAACAAGGTGCTGCTGGCGCTGTTCACGGGGGAGATGCTGCTGAAGATGTACAGTCTGGGCCTGCAGGCCTACTTCGTCTCACTGTTCAACCGCTTTGACTGCTTCATCGTCTGTGGTGGCATCCTGGAGACCATTCTGGTAGAGACCAAGATCATGTCTCCTCTGGGCATCTCAGTGCTGCGCTGTGTTAGGCTGCTCCGAATCTTTAAGATCACCAGATACTGGAACTCTTTGAGCAACCTGGTGGCATCGCTGCTGAACTCAGTGCGCTCCATCGCTTCCCTGCTgctcctgctcttcctcttcATCATCATTTTCTCTCTGCTGGGCATGCAGCTCTTTGGGGGGAAGTTCAACTTTGATGTGATGGAGACCCGCCGCAGCACTTTTGACAACTTCCCACAGTCCCTGCTCACTGTCTTTCAGATCCTGACAGGTGAAGACTGGAACTCTGTGATGTACGATGGAATCATGGCATACGGAGGGCCCTCCTTCCCGGGGATGCTGGTGTGCATTTATTTCATCATCCTCTTCATCTGTGGAAACTACATCCTACTGAATGTCTTCTTGGCCATTGCGGTTGACAACTTGGCTGATGCCGAAAGCCTGACTTCCGCccagaaggaggaagaggaggagaaggagaggaaaaagCTGGCCAGGACTGCTAGTCCAGAGAAACGGCATGAAAATGAGAAGCCACCTatagaggaggagaagaaggaggagaagataGAGCTGAAATCAATCACGGCTGATGGAGAGACTCCAACGGCTACCAAGatcaATCTAACCCCAAGTCTTTTTACTTTGTTGCTCTTGTTGCTTCCCACGATGGACCTCTTCACCTCAGGGGAGGATGAGGACGAGGAGCCTGAAATGCCAGTGGGACCTCGGCCTCGACCGCTTTCTGAGCTCCAGCTGAAAGAGAAAGCGGTCCCTATGCCCGAGGCCCGTGCCTTTTTCATCTTCAGCCACACCAACAAATTCCGGGTTCTCTGCCACAAGATTGTGAACCACAACATCTTCACCAACCTCATCCTCTTCTTCATCCTTCTGAGCAGCATCTCTCTGGCAGCAGAGGATCCAGTGAAAAATGACTCCTTCCGGAACAAGATCCTGGGTTACGCAGATTACGTCTTCACTGGACTGTTCACAATCGAGATAATTTTAAAGATGACGGCCTATGGAGCTTTTCTCCACAAAGGATCCTTCTGTCGGAATTACTTCAATATCCTAGACCTGGTGgttgtcagtgtgtctctcatCTCCTCTGGGATTCAGTCAAGTGCCATTAACGTTGTGAAGATCCTGAGAGTGTTGCGGGTGCTGAGACCACTGAGGGCCATTAACAGAGCTAAGGGCTTGAAGCACGTGgtccagtgtgtgtttgtagcgATACGGACCATCGGCAACATTGTCATCGTCACCACTTTGTTGCAGTTCATGTTTGCCTGTATTGGTGTCCAGCTGTTCAAGGGGAAGTTCTACAGCTGTACAGATGGCTCTAAGCAGACAGAGCCAGAGTGCAGAGGCTACTATATTGTGTACAAAGAAGGAGATGTGAATCAACCAGACAAGGCAGAGCGCAAGTGGGAAAAAAGTGAATTCAACTTTGACAACGTCCTTACAGGAATGATGGCTCTCTTTACTGTCTCAACCTTTGAAGGCTGGCCAGGGCTGCTCTACAAGGCCATTGACTCCCATGCTGAAGATGTGGGTCCAATTTACAACTACCGCGTGGAGATCTCCATCTTCTTCATCAtctatatcatcatcatcgccTTCTTCATGATGAACATCTTTGTCGGTTTCGTCATCGTCACCTTCCAGGAACAGGGTGAGCAGGAGTACAAGAACTGTGAGCTGGACAAGAACCAGCGCCAGTGTGTGGAATACGCCCTGAAAGCCCGACCCCTGCGCAGATACATCCCCAAAAACCCCTACCAGTACAAGGTGTGGTACGTTGTCAACTCAACCTACTTCGAGTACCTGATGTTCATCCTCATCCTTCTCAACACCATCTGCCTGGCAATGCAGCATCACGGTCAGTCAGTGTCCTTCAACAAGGCCATGAATGTGCTTAACATGCTGTTCACTGGACTGTTTACTGTGGAGATGATCCTCAAACTCATCGCCTTCAAGCCC

Function

symbol description
cacna1c Enables voltage-gated calcium channel activity. Acts upstream of or within animal organ development; calcium ion import; and regulation of heart contraction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in central nervous system; digestive system; lateral plate mesoderm; pericardial region; and splanchnocranium. Human ortholog(s) of this gene implicated in Brugada syndrome 3 and Timothy syndrome. Orthologous to human CACNA1C (calcium voltage-gated channel subunit alpha1 C).

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1C-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006896 True 2435 mRNA 0.51 19 24726492 24755821

Neighbor

gene id symbol gene type direction distance location
AMCG00006895 LOC107732972 coding downstream 11203 24684008 ~ 24715289 (-)
AMCG00006890 NA coding downstream 286994 24421102 ~ 24439498 (-)
AMCG00006891 NA coding downstream 319274 24388630 ~ 24407218 (-)
AMCG00006889 LOC107707394 coding downstream 337865 24377799 ~ 24388627 (-)
AMCG00006886 fgf6,LOC106573196,LOC105018229,LOC106609473 coding downstream 358556 24359181 ~ 24367936 (-)
AMCG00006897 LOC107590584,LOC107732972 coding upstream 28777 24784598 ~ 24805892 (-)
AMCG00006900 LOC106609805 coding upstream 206353 24962174 ~ 24969473 (-)
AMCG00006902 NA coding upstream 375991 25131812 ~ 25145341 (-)
AMCG00006904 adipor2,LOC107726009,LOC105910465 coding upstream 486733 25242554 ~ 25258567 (-)
AMCG00006906 LOC107656325,LOC106609811,LOC107658849,LOC107572035,LOC107726030 coding upstream 553804 25309625 ~ 25313441 (-)
G113301 NA non-coding downstream 52994 24671788 ~ 24673498 (-)
G113225 NA non-coding downstream 350563 24373692 ~ 24375929 (-)
G113212 NA non-coding downstream 390578 24331087 ~ 24335914 (-)
G113209 NA non-coding downstream 404630 24315732 ~ 24321862 (-)
G113066 hipk2 non-coding downstream 1171753 23547797 ~ 23554739 (-)
G113374 NA non-coding upstream 635975 25391796 ~ 25392318 (-)
G113375 NA non-coding upstream 639715 25395536 ~ 25398698 (-)
G113389 NA non-coding upstream 960704 25716525 ~ 25716987 (-)
G113390 NA non-coding upstream 962596 25718417 ~ 25718792 (-)
G113391 NA non-coding upstream 963541 25719362 ~ 25719575 (-)
AMCG00006866 NA other downstream 1155359 23568155 ~ 23571133 (-)
G113050 NA other downstream 1319285 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 1768186 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 2528828 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 3761930 20854057 ~ 20964562 (-)
G113530 NA other upstream 1744194 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 2646779 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 3511441 28267262 ~ 28292598 (-)
G113833 NA other upstream 3955398 28711219 ~ 28812548 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000019_05229403_05293549 CACNA1C coding CI01000019 null 5229403 ~ 5293549 (-)