AMCG00006886 (fgf6,LOC106573196,LOC105018229,LOC106609473)


Basic Information

Item Value
gene id AMCG00006886
gene name fgf6,LOC106573196,LOC105018229,LOC106609473
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 24359181 ~ 24367936 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006886
CGGCCATCGTTGCCCATCCAGAGAGAGGCCGGAGCTCCAAAACATGGtaatcaccaccaccaccaccataaGCTCAGCCGCTCTCTCTCCATTTGCAACGACGCTGCTCTCGGGCTTTCGTTTCATGCCCGAAACCCTGATCTGCCTTCCAAAAATAAGCCCTTGCCACCATGCcgaaggaagaaaaacaagaagagcGGTATTTTTAGggccattaattctgaccacgTGCCCCGAAGGTAAACCGGATGGGCATTGCGCAAAGGCTACCCACCAGTATGTCCTACGAGGCCAGCACTCACAGGACGTTGCCTGCGATTGTCCTCCTGGGATTTCTAGTGGGCATTGTGTCATCATATCCGATTCCAAGCAGGACTAATGGGACAGGGCTGGAGAAAAGGTGGGAGACTCTGTTCTCCCGCTCCATTCTCGGGCTCTCAGGGGAGAAGGCAGACCTGAACTGGGAGAGTGACTATTTGCTGGGCATCAAGAGAGTGCGGAGGCTTTACTGCAACGTGGGCATCGGGTTTCACCTCCAGATCCTCCCAGACGGATGGATAAACGGTGTACATAATGAAAACCAGTACAgTCTGATAGAAATCTCAACTGTAGAGCGAGGAGTGGTTAGCTTGTATGGAATCAAAAGTGACCGGTTTGTGGCAATGAATAACAGAGGAAGGTTATATGGAACGGCAATTTTTCAAGATGAGTGCAAGTTCAAAGAAACCCTGCTGCCCAACAATTACAATGCATACGAGTCCTCGACCTACAGCGGCTCCTACATAGCACTTAGCAAACACGGACGAGCGAAAAAAGGAAGCAAGGCCACGACGTCGATGACTGTGACGCATTTTCTCCCCAGAATGTGAGGAAAGCACCAGCAATTCAGTAAATCACTAATTTGCACATGTGAATAGTTTATCAgtttagaaaaacaagaatacaaTCTGAccgcagaaaacaaaacaaaacttcagtatatttcatagtatttattttgtctttaaatatgtatatttggtTAGTTCACATTCTGTTAGAACTTGTATATGCCATATTTCGCTGCTTATCTTTACTATAATGTATATTACAAGTAAGAGGCCTAAATGACCTCTTTACTTTATATGGGTGCTTAACCCTGTCAATGGGATGACTAATATCCTTAGCTTTTAGAAGTGAAATGGATACTTTTTATTACCTCAAACAGCAACCTCCTGACTGACAAGGATACACAAAGTTATGCAGACTAGAATTTCCGTATATTTTTCCATAATTTAGCGCCTGGAGAgctggatgtttttttattttctgcataatGAACCCGGAGCCTTTCTCTTCCCAAACTGCTGATGTTTTCTCCAGCACAGTTTTCCAAGTAACTCTTGATAAAATCTAGCAGGAGTTAGAAATTGGGTTGACATCCAAACACACATAATTCTTAGAAACTTTTAAGACATTTTGCTTTCTCGAACTGTTTTCTCCAAATACTCAAGATAACTAAGTACTAAATTAGCCCTGCTTGCATAACTCTTCTATTTCGGTCGTTGCTGAAGCCATGCTTATGAACACTTAGCACAGTACATGTGCACGTAAATTGGGCAGTTTTCTTTGCAAAGGTTGTTGACAGTGTGCGTCAAGTTTTAATAGGCctgctaaataataattacgGATTAcatattgacaaaaaaaaagcaattcccCCCCCAAACTTTGGTATAGCTGTCCCTAACGTTCGATGCtgattgtttttcagattatttaGGCTCCAATGCAATTTAAAGAAACTGTTGTCTTCTAAAAGTGTCAGAGGATGATAGAGCTTGATGTCAATCCTAACCAGGAATCCTTGGTTGTTTGCTTCCAGTGGCACATGTCTACTCCTGCAAtagcaaaactaaaaatgttacTTAGCTGCACTGTCATCAGTTTTGTTTGCATATGTGCTAAAGTGTCAATGTAAAGAATACATGAGGGGAAAACAGTGTAATCAGTCTGAAAAAACTATTAATCATACTTGAATTAAGACAAAAAGTCCTTGAGGGGTTAGAGATGCATGTACAACAGTCTGCcgtattaaaatgagcagccttaTGATATAATACAAAACGGAGCATGCACCAGCACAGTTTGTTTGCCCGATAAATGCGTTATCGGAAAACTCGATTAACTCTGGGGCTGTTCATTGGAATATGGCAGACCGGTATGACATGTATGGTGTATACTTGCATACAAAGGCTGCTCTTTACACGTTATAGCCATCCTTTttgaaagtggaaaaaaaaggcCTATTTTAATCCAGAAAAGACTTATGGGACACCACATGCAGCATCCATTGTTGATGTAACCCTGCGAGAATCTCAGTCATGCGGGGGGTGTAGGCTCCTTCCAAAATACCTGAGACGACTACTCGCTCAGTTGTCACTATAAAAGCAGCGGTCAGGGAGAGCCTTGAAATTCCTGCAGTAACAGAGGGCTTCCTTCCCCGTTTAAACCATTTTTAGTACAAGGTCAGAGCGGCGCTCACAAGCACTGACTAAATTAAAAGGTCTTCAGGACATAGGGATAAAATGACTAGGTGCTGTTATGTCTTGGAGCTCATTCCCAGACACCCTACAATGTCCCCTACTGAGTGTTTTTACAGCCCCTTGGTTTTCATGATTTCAAAGTGAGTTGCCTTATTGTTTTGGGATTCTACGAAACGTCCGGATATTTCAGAAGTTACAGTTTTAGGTTGGGATTCCCTTGTACATTAAGATGAATCTGAAGAAATTATATGCTTATCCACCTGTTTAAAACTCTCCTCAAGGTCTCAGGTTTAACATATGATGAGTAGATTGAGTCccatcacttttttatttttttaatacattactttCACGTGATAGCTTCCCTTTTTCAAGCTGGTTTGTATGAAAACCAGCCTACAGCAAACACATAATTTACTTAGGTTGTAGAACAAATCCGTACAAAATTTCCATACATAAGAATCCTATATTGCATAGACACGTTCCTTGTAAGAGGAAGCCTCCCTGTGTTACTTTAAGGTCTGATATGACTACAGATTGGACCCTTTATTCCTTAGAAAAACAACCAGACATGAGCTGTATTAAGTCTGACCTCCAGCACCAGTTTTATCCAGTGTCAAGGGGCCCGGGAAGCCTGCGTGCTtcgcagacactcatttgtgcaGCAAGTATGCCACAGCTCTGGACGACATTCCTAGAATGCATTCTTTACAGCTATTTCTAACTAGAGAGAAGTATGCATTTAAAGAGATGATCAGCTTATTCTGCTTAGGGTGTCTCTGTGAGTGCAGgtggagatttatttttcagtgccGAATTGCGTAGAAGCCTGTTTTTCTTGGGTTTAATGTAATGGGAGCATGGAGACAGCAGACAGAGTAAAACATGTTcaatgtataacattttcacTACCTGCCATCCTATAATAACAGGAATAAAATTAAAGGCACATAATTAAACTGATCATGAATGTTTACCTGATACAATTAGTTGGGATAGGTGCAATCCCAAATATTTAGAAACCCTTATTCTTAACAGCATTTTGTGAAACTCTGATGGGAATCTCTGTAGTTTTGGCAAAAGACTGGACATGAACATCCTACTGGATTCTATCAGATCATTTTGCAGCGCCCAGGGAATTATCTGGATTgtatcaatcaattaattttagAGATAATCCCTGTGGATAATCACAGACAGGTGCTTGATGTAATCCAGGGAGATTCTTCAGTCTGGTTATAtgctcaaaacatttttttattattatttttctttctagaaTGGATACAGTTTGGTAAATTACACCAATGCTTCATTTATTAGACATCAGACATGGAGAGAAAAATGAAGTGGAGTGTTTTAGGAGTGGGCtgttgtgaaaacaaaaacagcctgaCCCTTTTTAAAACTGTGGTGTTGCAGTCTTATGTATGTGGTTTGCCAAAATCAGGCATACTGACTGAAGGtattgaatgtttgtttgtttgatatatTAGGGATGCCATTGAATCACATATATACTCATTCACTCGCATCCCTGAAAATATGTAGTTTGTTTGAATTGTGACAGATAGCAAAAAATGAACTGTGAAAAAAGCTAAACTTTTTGTGGGAAGTCAACATGTCATTAGCCTCTAACATTTATGACTTTTAATGGGGGCTAGAGTTCCGATTGGAATCTCCCTTTTCCACAGTTTTCTCTATACcctattaaacaaaattaaacaaaattaaacaagtacataaaacataacTTGCTGAAAAGCTAGGTCTTGCCAGTTAACTTTAATTCTTCACCATGGAAGAATAGTGTATATTCAATGTATGTGTATTCAAGAAAATGATTATTTCCCTCTAATCCTCAAGCAGTGAATAAGATTGTCAAAGTGTGTTGCAATAAGATCACTGTGCATTTCTTAGGGATTAAGGTTTTTCAGTTGTCAAAGCAGTACTGTTATTTATGCTAtttcagaaattatatatttctcccCAGTACTCACGGTCTCtgcacaaaaatgttttgcttcaaAAGTGGAGATTTCAGTTACTTTTTAACCCTCATCAAAGAATTCACCTGATCtgcagatgtttatttatttatttatttatggttccAGCTGAGTTGATCTCCAATTGTTAAACCACTGACGGTAAATACAAATTTCCAGTTAAACTATTTAGAGCTTAGCTACAACTTGTAAACCCAAGGGTACTCCAGGAACAGGGCTGCAAACCACTGGCATAATTCATAGTACTCTGAAAGTGCAACATTATATTACTGAGTGCCACAAATTATTTGTTGATATTTGGGGGTTGATGGTCAACTTTGAGACCATCTTTCTGaaaatttgcttttaaaaacaaaattatattaccTGTATGTGTAGGCCCCAATATCCATCATGCTGACtggaaaatatgttattttatttatttatatttgttggTTCAAGAAATATTCGACACAATACCCATACAAATAAGAgaatatgtgtgagtgtgtgtgtaagagagagagagagagagagagagagagagagagagagagagagagagactatgtAAAATCAAGAGCAGCCTTTGTGTACCTCATCAGAATCTTGTATTCCTGCACTGAAGAAGTGTATCATCTCAAATTCCCTTTTTGTTAACATATACCTCACCTTCTGCCTTAGTactgatttgttattttgattgtaAATTTGTAGGAGAGACAGGATTATCCAATcatttgtttctaaaaaaaaaaaaaagtatatatgaaatgttttccttttatttttgtacgtATGTGCTGTGCACAGCAGTTAATGTATTCC

Function

symbol description
fgf6 Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Acts upstream of or within fibroblast growth factor receptor signaling pathway and positive regulation of cell population proliferation. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Biomarker of prostate carcinoma in situ.

NR:

description
PREDICTED: fibroblast growth factor 6-like

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006886 True 5344 mRNA 0.39 3 24359181 24367936

Neighbor

gene id symbol gene type direction distance location
AMCG00006887 NA coding downstream 1401 24353437 ~ 24357780 (-)
AMCG00006883 NA coding downstream 301356 24041077 ~ 24057825 (-)
AMCG00006882 NA coding downstream 327979 24025708 ~ 24031202 (-)
AMCG00006881 NA coding downstream 364827 23972116 ~ 23994354 (-)
AMCG00006880 tead4,LOC105029403,LOC107549581,LOC107669037 coding downstream 388977 23932400 ~ 23970204 (-)
AMCG00006889 LOC107707394 coding upstream 9863 24377799 ~ 24388627 (-)
AMCG00006891 NA coding upstream 20694 24388630 ~ 24407218 (-)
AMCG00006890 NA coding upstream 53166 24421102 ~ 24439498 (-)
AMCG00006895 LOC107732972 coding upstream 316072 24684008 ~ 24715289 (-)
AMCG00006896 cacna1c,LOC106515158,LOC101471946 coding upstream 358556 24726492 ~ 24755821 (-)
G113212 NA non-coding downstream 23267 24331087 ~ 24335914 (-)
G113209 NA non-coding downstream 37319 24315732 ~ 24321862 (-)
G113066 hipk2 non-coding downstream 804442 23547797 ~ 23554739 (-)
G113014 NA non-coding downstream 1036030 23322933 ~ 23323151 (-)
G113013 NA non-coding downstream 1037410 23321077 ~ 23321771 (-)
G113225 NA non-coding upstream 5756 24373692 ~ 24375929 (-)
G113301 NA non-coding upstream 303852 24671788 ~ 24673498 (-)
G113374 NA non-coding upstream 1023860 25391796 ~ 25392318 (-)
G113375 NA non-coding upstream 1027600 25395536 ~ 25398698 (-)
G113389 NA non-coding upstream 1348589 25716525 ~ 25716987 (-)
AMCG00006866 NA other downstream 788048 23568155 ~ 23571133 (-)
G113050 NA other downstream 951974 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 1400875 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 2161517 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 3394619 20854057 ~ 20964562 (-)
G113530 NA other upstream 2132079 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 3034664 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 3899326 28267262 ~ 28292598 (-)
G113833 NA other upstream 4343283 28711219 ~ 28812548 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024001 fgf6a coding NC_007136.7 CM002909.2 16945348 ~ 16951890 (+)
grasscarp (Ctenopharyngodon idella) CI01000115_02525592_02529406 FGF6, FGF6A coding CI01000115 null 2523576 ~ 2529801 (+)