CI01000115_02525592_02529406 (FGF6, FGF6A)


Basic Information

Item Value
gene id CI01000115_02525592_02529406
gene name FGF6, FGF6A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000115
NCBI id null
chromosome length 2997417
location 2523576 ~ 2529801 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000115_02525592_02529406.mRNA
ATATAAAGAAGCAAGGATTGAACAATGATACCATATACCAGTCTGGTCTTCTAATCACTGTATTTGCCTTTTATTACATGATATTTCCCTGTGAGGTTGATATAAATTATAAACTAATATTAACATAATTTAAAGTCCCCCTGTAGTCAATAATTGTATCCCTTAAAACTCATCTTTGATCACCAAAATGAAATATTTACACTTTTTTCCTGTGGGAAAAAAAAAAAATCATGCCTTAAAATAGCTTGAATGTAACTCTACACCCTTGCTTCATTTAATATACATGGATCTATAAATACGCTAATTAGCCCCGCCTCCACTCACTCACACGAGCTCAGAGATCCATTCGGTCAACTTACTGAGGTAAACGCTGCACAATGGTATCGCTTTTTACAAAGTCGAACACATGACTGTAATTAATATGATTAGCCTTTTGCTTGACTACGTTATCAAGCAGCTGCCAATAATGTGTTGCTAATGTTACACAAACCATGTTCCCGTTCGTGAGTCAGACAACAGCCTTCTAAATATCAATCTCCTTATAAACGCTTTGAACACCTCAGAACATCAGTGGAGAAAGGCATAACATCGTTATATACATCATACACGGCTATATTGCTAAATCTACTATTTGTTTTTGTTTTTTTATATCAACAGAAAAATTATACCGCGATGGCTTTGTGGTACTCTCCTGCTTCAGAGCGCTCATGGTTAATGATATGCTAAAGTCCGCCGGCACATCGATGTGATTGGTTACAGGGTAGCTTGTGACGTCACAGACACCAACGGTCTTTTTTCACTGCAGTTTTAAATAGAAAATACTCAGCAATGGTGTTGACAAATGAATTTGCACATGGTTTGTCTTAAAGCATATTAAAACACCACATAGACATATAAACAACATTAAAAACTTGATTTTCACCACAGGGGGACTTTAACATTTTGACTGATTTAAGTTAATTGGGTTTGAGAAGTGATGAGCTCTGTGAGTCTTAAATATCAATAATACCCAAGGAAATTCAAACAAAAATAGCCTATTACTTCCTTTAAAATTATCTCAAAGGCTATTAACAAAGCTAGATATAGCTTGTTCCATATTGGAGCCTCGTACTGTACAAGAGGATAATAAATAGCCTAAAAAAAATGTATTTAAAAAATACTTGACACACGCCTCTTAAATAGCAGGTTATTTGATGCACTTTAGATTGCAACATTGTGATACAGCGCCACCTGTTGGACACATACTGCCTTTAATTTTTGTGTACCTGCCAGGTGTAAAAACATTATCTATCTATCTAGTGCTTAGTCAATTAGGATCCGTCAGCAATCAAAGGAGTTCAGCTCGCGCTCGGATGTGCGTTACGTCCAACTTATGTGTTTTTTACCCAGATAAATAAATCACGGGGGCATATTCAAAATATAGCTTAGTGAAAGCTTCCTGAGAAAACAGCGCAGGAAGTGTTTTGCAAGATTGACATGGCTCCGCGGTGACAACTGGCCTGTTTTTACACCTTCCTTCTAAATAAGGAAGCGGCCCGTCGGGCATATGACCACCGGTCCAATTTGGGAGCTGCCAACGAAGCCCATCACGCCCCATGTTCTCCCGCGAGCTCTCGCGCTCACTGTCCCCGGGGCCGCTCGCGTGGATTGACAGCGATTGGGTTTTGGCGTTCAAAGACTGACCCCCGGCGGCGGTGAGGTCAGCGTGATGTCATCCTGAAGGTGAGTGATGTCATCCCGAAGATCTCCCAGGCAAGGTGAGCTTGCATTTTGGTGAGTGTGTGGTGCTCCCCATCCAGAGAGGTGAAACATGGTAATCATCATCGCCACCACCGCCACCAGCTCAAGCTCTGCCGCCCTGCTCTTCTCATCTACCGAGGGGCTTATTGCGTTACACGCCCGCAGCCCCGACCTGCCTTCCAAAAATAAGCCCCTGCCACCATGCCGAAAGAAGAAAAACAAGAGTGGTATTTTTAGGGGCATTAATTTTGACCACGTGCCCCGAGGGTAAACCGGATGGCCACTGCGCAAAGGTTCCTCATCAGTATGTGCGAGAGCAGCGGACGCTGGACGTGGACTGCGGTTGTTCTGCTGGGCTTTCTGCTTGGGATCGTGTCCTCCTACCCCACCTCGAACAGGAGTAATGCAACTTCACTGGAGAAAAGGTGGGAGACGCTCTTCTCCCGCTCCGTTTTGGGGATCTCGGTGGAGAAATCGGACCTGAACTGGGAGAGTGACTATTTGCTGGGCATTAAGAGAGTGCGGAGGCTGTACTGCAACGTGGGCATCGGGTTTCACCTGCAGGTCCTGCCAGGCGGAAAGATAAACGGTGTCCATAATGAGAACCAGTACAGTCTAATTGAAATCTCAGCGGTAGAGAGAGGAGTGGTTAGTCTATACGGCGTGAAAAGCGAGATGTTTGTCGCGATGAGCAACCGCGGAAGGTTATATGGAACGAGGGCCTTCCATGACGAGTGCAAGTTCAAGGAGACACTGCTGCCCAACAATTACAACGCATACGAGTCTTCCATTTACAAGGGATTTTATATTGCCCTCAGCAAACATGGCCGCTTGAAGCGAGGCTACAAGGCTTCCCCAGCAATGACTGTCACACATTTCCTCCCACGTTTATGAGCAAAACTGGCAATAACACAATAATTTGCACATGTTGGATGTTCTCGTAGGTAACCCAAACATGCTGAGAGGTGAACTGCAAAGAACTAAAATAACACTTACGGTATTTATTCTCGTTGAAATAATAATAATAAGCCTAATATATGTATATTTCGGTAGCTTACTTTGTGTCTGAACTATGTGTACATGCCATTCTTTGCTGCTTATGATTTCTATTATGAATATATGAGAGTCGAGGAACTTTTTTTGCCCTCTCACTTTTTATGGGTGCTTGCCATAACTGGTGTAAACCATACCTGGCATTGGACTAACATCCTCAGCTTTTAGAAGTGAAATGCATACTTTTTATTACCTCAAAGAGCCACGTTCGCATTGGAAAAAATATGTAGGGAAAA

Function

symbol description
fgf6a Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Predicted to be involved in several processes, including fibroblast growth factor receptor signaling pathway; positive regulation of cell population proliferation; and positive regulation of macromolecule metabolic process. Predicted to be active in cytoplasm and extracellular space. Is expressed in axis; hatching gland; notochord; and polster. Orthologous to human FGF6 (fibroblast growth factor 6).
fgf6 Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Acts upstream of or within fibroblast growth factor receptor signaling pathway and positive regulation of cell population proliferation. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Biomarker of prostate carcinoma in situ.

NR:

description
fibroblast growth factor 6

GO:

id name namespace
GO:0005104 fibroblast growth factor receptor binding molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000115_02525592_02529406.mRNA True 3029 mRNA 0.43 3 2523576 2529801

Neighbor

gene id symbol gene type direction distance location
CI01000115_02508377_02521082 NA coding upstream 529 2508377 ~ 2523047 (+)
CI01000115_02475865_02486717 C8H12ORF4, CUNH12ORF4 coding upstream 36859 2475865 ~ 2486717 (+)
CI01000115_02377042_02384028 NA coding upstream 139414 2376759 ~ 2384162 (+)
CI01000115_02307152_02312668 NA coding upstream 210428 2306576 ~ 2313148 (+)
CI01000115_02270339_02301367 CECR2 coding upstream 222158 2269353 ~ 2301418 (+)
CI01000115_02537031_02537396 NA coding downstream 7230 2537031 ~ 2537897 (+)
CI01000115_02545797_02551946 NA coding downstream 14076 2543877 ~ 2552306 (+)
CI01000115_02565311_02568828 NA coding downstream 34966 2564641 ~ 2570993 (+)
CI01000115_02577134_02587408 NA coding downstream 46738 2576539 ~ 2587503 (+)
CI01000115_02625188_02632282 NA coding downstream 94994 2624795 ~ 2633677 (+)
G334047 NA non-coding upstream 61326 2461938 ~ 2462250 (+)
G334045 NA non-coding upstream 70270 2452969 ~ 2453306 (+)
G333972 NA non-coding upstream 127695 2319566 ~ 2395881 (+)
G333971 NA non-coding upstream 205391 2317704 ~ 2318185 (+)
G333970 NA non-coding upstream 206043 2317331 ~ 2317533 (+)
G334004 NA non-coding downstream 13009 2542810 ~ 2557948 (+)
G334103 NA non-coding downstream 162778 2692579 ~ 2693810 (+)
G334115 NA non-coding downstream 171668 2701469 ~ 2703638 (+)
G334110 NA non-coding downstream 225012 2754813 ~ 2794415 (+)
G333298 NA other upstream 1835901 683160 ~ 687675 (+)
G333237 NA other upstream 1986263 461127 ~ 537313 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024001 fgf6a coding NC_007136.7 CM002909.2 16945348 ~ 16951890 (+)
bowfin (Amia calva) AMCG00006886 fgf6,LOC106573196,LOC105018229,LOC106609473 coding CM030134.1 CM030134.1 24359181 ~ 24367936 (-)