RNA id: TU243629


Basic Information

Item Value
RNA id TU243629
length 328
lncRNA type sense_over
GC content 0.40
exon number 1
gene id CI01000050_03989489_04121180
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3988257 ~ 4121393 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACAGATTTGCCGCGCGCCTGCAGTATTTACACGCGATTAACTCTCTGGCAGTTACAGTCTTTGTACAGCCCAGTCTCAGTTACCGTTGCTTCTTCTGTTCTTGATCATCTGTTGCAGTCAATTGCTTAAACCACTTAGTTGACGTTTACAAATGATTAATTTGGGGTTTTATTTTTTATTTAACTCTCAACACAAACCATTGAGCAGAAAAACAGTCTCCTCCAGTCTCCATTAATCACTACATTCTCATGATATTCTATTCTCACGGGTCTATGACCTTTATATGGACAGTCTGACAACCCACACTGACTGAGAATAGGCTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243626 lncRNA upstream 3942 4116809 ~ 4117109 (+) True G214727
TU243624 lncRNA upstream 5450 4115366 ~ 4115601 (+) True G214725
TU243618 lncRNA upstream 11161 4109495 ~ 4109890 (+) True G214719
TU243473 lncRNA upstream 180912 3931890 ~ 3940139 (+) False CI01000050_03938328_03956122
TU243466 lncRNA upstream 203890 3912797 ~ 3917161 (+) False G214571
TU243658 lncRNA downstream 144990 4266368 ~ 4266683 (+) True G214754
TU243671 lncRNA downstream 145726 4267104 ~ 4267427 (+) True G214767
TU243674 lncRNA downstream 149887 4271265 ~ 4271510 (+) True G214770
TU243675 lncRNA downstream 150210 4271588 ~ 4271847 (+) True G214771
TU243703 lncRNA downstream 230957 4352335 ~ 4352724 (+) True G214798
CI01000050_03938328_03956122.mRNA mRNA upstream 164197 3938328 ~ 3956854 (+) False CI01000050_03938328_03956122
CI01000050_03814516_03818892.mRNA mRNA upstream 302112 3813420 ~ 3818939 (+) False CI01000050_03814516_03818892
CI01000050_03807697_03808793.mRNA mRNA upstream 312181 3807697 ~ 3808870 (+) False CI01000050_03807697_03808793
CI01000050_03679119_03683710.mRNA mRNA upstream 436882 3679080 ~ 3684169 (+) True CI01000050_03679119_03683710
CI01000050_03641769_03645039.mRNA mRNA upstream 475942 3639187 ~ 3645109 (+) True CI01000050_03641769_03645039
CI01000050_04122649_04127014.mRNA mRNA downstream 1271 4122649 ~ 4127045 (+) True CI01000050_04122649_04127014
CI01000050_04159232_04161131.mRNA mRNA downstream 37633 4159011 ~ 4161131 (+) True CI01000050_04159232_04161131
CI01000050_04190820_04204792.mRNA mRNA downstream 69442 4190820 ~ 4205923 (+) True CI01000050_04190820_04204792
CI01000050_04275924_04277061.mRNA mRNA downstream 154546 4275924 ~ 4277647 (+) True CI01000050_04275924_04277061
CI01000050_04281992_04287535.mRNA mRNA downstream 160614 4281992 ~ 4287802 (+) True CI01000050_04281992_04287535
TU243616 other upstream 12771 4107582 ~ 4108280 (+) True G214717
TU243465 other upstream 164007 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243391 other upstream 312312 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243790 other downstream 470177 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU244350 other downstream 1286207 5409444 ~ 5409648 (+) True G215383
TU244520 other downstream 1508232 5629610 ~ 5631012 (+) False G215539
TU244521 other downstream 1508232 5629610 ~ 5631203 (+) True G215539
TU244783 other downstream 2539810 6661188 ~ 6665703 (+) True G215773

Expression Profile