RNA id: CI01000050_03641769_03645039.mRNA



Basic Information


Item Value
RNA id CI01000050_03641769_03645039.mRNA
length 3678
RNA type mRNA
GC content 0.38
exon number 3
gene id CI01000050_03641769_03645039
representative True

Chromosome Information


Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3639187 ~ 3645109 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATATATAGCAGGCAGCCTTGCTTGGCCTAATCAATTTCTCACACTTCATCTACAGGCTCATGCACAGGCAGGAGGCTACCAGAATGGAGCAGCGTTTTTTGCACTATAGGCTTACGTTTTATAATAGGCTTTACAAATATTTATTTTGTTTAAATATTATATGTTCTAAAACATTGTTTAATTATATTAAAATAGTAGGCCTATAGTCTTAGGCCATCATTTTCTGTGTTCATCATTGTTCACGGTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTACGTTTCTTCATTCGGAATTTCAGATCCATTTACGATCCATTCAGTTATTTCTGAATAAACAAACAACGCAGTTTACATGCTTCTTCCTTGTCGTATTATTCATTAAGATAATAATTAATAAATGCACGCACAATTATGAACTTGATAAATGTTACAGATATGTTTTACTATGCACAAACAAATACCTTTTAACTTACATGTGCAAAATTCAGAATTAAATGAATGTGCTGCAATTTGTACAAAAAGAGAGTCTGTAGTAGCCTACATGTTTTAGCCATTAAATAAGCACATTTAGTTTCAAGTTTAAGTTTTGTTTTGAAGAAAGATTTTCTTTAAAGTGAATTTCGTTTAGTATAAATTGTATCTTAATTTTAATGCATTTTTCATCAACCAATTGCCTGGATTTAATACATAAAAAGCAATATAGCAGACAATATAATAATGATATGGAGGCGCCGGCGCGCCGCGGTCACACACATATTATGTTGAAATAACAATATGTTGAAGTAACATTATTAATAATAATTAATCTTTAAGAATATTTGATTGAATGCTGAATGTTGTGCTTGTTCAATTTAATAAAATTAAAACTTTAATTATGATAATTAAAATAATTGAATATTTAATATTGAGTGACCAATTTTTGCTCATTTATTAATAGTATTTATATATATATATAACTGCGCAGCTCCCCCCTGTAGCCTAAATGATCTAGCACAGTAGCACCTGCGTTAAAAAAAAAAAAATCTGGCGCTGCCCCTGGTTATAACGGCCCACATATTAAAAATGGTCGGGTTTAAATCGGGCTCGGGCTCATAATTACAGTGAACGTGTCGGGCCGGGCCGGGCTCGGACACAACGGGTTTGTTGGGCCCGATCTAAGCTCTAATTCAGACCCCCTTAAATTTTTCACTCTTTGTTATATTGCAGCAATTTGCTAAATTCATTTAAGTTCATTTTTTTCCCTCATTAATGTACACACAGCACCTCATATTGACAGAAAAACACAGAATTGTTGACATTTTTGCAGATTTATTAAAAAATAAAAACTGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTGTGACACTCATATATTTAACTCAGGTGCTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTGTACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATATAAGACCTTCAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAATGTCTGCTGCACTTAAGGTTCCTAAGAGCACAGTGGCCTCCATAATCCTTAAATGGAAGACGTTTGGGACGACCAGAACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCGGGGGAGAAGAGCCTTGGTGAGAGAGGTAAAGAAGAACCCAAAGATCACTGTGGCTGAGCTCCAGAGATGCAGTCGGGAGATGGGAGAAAGTTGTAGAAAGTCAACCATCACTGCAGCCCTCCACCAGTCGGGGTTTTATGGCAGAGTGGCCCGACGGAAGCCTCTCCTCAGTGCAAGACACATGAAAGCCCGCATGGAGGACTCCAAGATGGACAATAAGATTCTCTGGTCTGATGAGACCAAGATAGAACTTTTTGGCCTTAATTCTAAGCGGTATGTGTGGAGAAAACCAGGCACTGCTCATCACCTGTCCAATACAGTCCCAACAGTGAAGCATGGTGGTGGCAGCATCATGCTGTGGGGGTGTTTTTCAGCTGCAGGGACAGGACGACTGGTTGCAATCGAGGGAAAGATGAATGCGGCCAAGTACAGGGATATCCTGGACGAAAACCTTCTCCAGGGTGCTCAGGACCTCAGACTGGGCCGAAGGTTTACCTTCCAACAAGACAATGACCCTAAGCACACAGCTAAAATAACGAACGAGTGGCTTCACAACAACTCCGTGACTGTTCTTGAATGGCCCAGCCAGAGCCCTGACTTAAAACCAAGGCATTGTTAGAACCAAGCAAAGACTCAGAGAGCTGTATTGGTGGCCGGGTATGGATTCCCAGGTTGAGACAGCCATCAAATCATGCATTACGTGTCAAACTCATGACAAGTCAGCAGTCGTTCGCACTCCGCCACTCCAGCCTGTACCCCTCCCAAATGGAGCATGGGAGAAACTCGCTATAGACATTGTGGGGCCCTTTGACAAAGCTCCAGCAGAATGTCGTTTTGCTGTAACTTTAGTGGACTACTTTAGTAACCCGAAGGAGCTGATCTCAGATCACGGCTCTCAATTCATGTCATGTGAGTTTGAAATGTTTCTTCAAAACCGAGGAATTATGCATCGAACTTCATCTGTGTATTATCCTCGTGCCAATGGAGAGGTCGAACGTTTTAACCGTACTTTGAAGCACGCATTGCTAACTGCTTCCCTGGAAGGCAAAGGATGGAAAGAATTCACAAGGGAATTCTTACAAGCATACCGTGCTACACCTAATTCGACTACTCAGCGTTCACCTGCTGAATTGTTACATGCAAGGCCGATGCGCACTAAACTTCACATCTCAGGAGTACAGAAACTGCAGCATCTTCAGCAACCATGTGTGCAGAACATTGTGGATCGAGTGAAATACATGCAGAAGAGCTCCAAAACATACACTGATCGCAAGCGTGGGGCGACGGAAGTGTCATTCAAACAAGGATCTTTTGTTCGAGTGAAGCGACCAGGTATCCTTCCTAAGCTCCAATCTGCATTTTCCAAACCATTGAAAGTACTGCAAAAGACTGGTCCTTACACTTACAAACTGTCTGATGGGCGTACTTGGAATGCTTCTCACCTCACACCTTTCTCTTATGGGAAGGAGGAGAGTGGGGTACAGGAACTGGCTAACTTTGATTATGACTGTAAAATGCAAACTGTACCAGTGACTCAGCCGGAAAGACAGATCACACACTGCCAGAGCTACAGGGACTTCAGCACTCACATCCAGTCTGAAACAGACACTTTACATGATGATGATATGCATCACAAAAGCAAAATGAAGCTTCTGAAAAACAATAGAATAATATTCTTGAAGTAACTGCTGGCCTATATAAGAAAGACTGGGCCATCAGAACAATGCTTTAAAGGTTTATGAACTGTATTATATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU241745 lncRNA upstream 88607 3550198 ~ 3550580 (+) True G213113
TU241706 lncRNA upstream 94076 3446464 ~ 3545111 (+) True G213074
TU241640 lncRNA upstream 427333 3211584 ~ 3211854 (+) True G213019
TU241637 lncRNA upstream 437545 3199786 ~ 3201642 (+) True G213016
TU241614 lncRNA upstream 448448 3190519 ~ 3190739 (+) True G213000
TU241791 lncRNA downstream 26783 3671892 ~ 3672877 (+) True G213153
TU243369 lncRNA downstream 83424 3728533 ~ 3728810 (+) True G214496
TU243373 lncRNA downstream 86859 3731968 ~ 3732173 (+) True G214500
TU243374 lncRNA downstream 93082 3738191 ~ 3738542 (+) True G214501
TU243376 lncRNA downstream 107933 3753042 ~ 3753268 (+) True G214503
CI01000050_03599274_03618237.mRNA mRNA upstream 20147 3599274 ~ 3619040 (+) True CI01000050_03599274_03618237
CI01000050_03573096_03586434.mRNA mRNA upstream 51876 3573096 ~ 3587311 (+) True CI01000050_03573096_03586434
CI01000050_03557372_03567755.mRNA mRNA upstream 71208 3557327 ~ 3567979 (+) True CI01000050_03557372_03567755
CI01000050_03552033_03552887.mRNA mRNA upstream 86264 3551122 ~ 3552923 (+) True CI01000050_03552033_03552887
CI01000050_03528076_03531738.mRNA mRNA upstream 106577 3527843 ~ 3532610 (+) True CI01000050_03528076_03531738
CI01000050_03679119_03683710.mRNA mRNA downstream 33971 3679080 ~ 3684169 (+) True CI01000050_03679119_03683710
CI01000050_03807697_03808793.mRNA mRNA downstream 162588 3807697 ~ 3808870 (+) False CI01000050_03807697_03808793
CI01000050_03814516_03818892.mRNA mRNA downstream 168311 3813420 ~ 3818939 (+) False CI01000050_03814516_03818892
CI01000050_03938328_03956122.mRNA mRNA downstream 293219 3938328 ~ 3956854 (+) False CI01000050_03938328_03956122
CI01000050_03989489_04121180.mRNA mRNA downstream 343148 3988257 ~ 4121393 (+) False CI01000050_03989489_04121180
TU241503 other upstream 773365 2842819 ~ 2843139 (+) True G212938
TU241491 other upstream 864054 2774839 ~ 2775133 (+) True G212927
TU240958 other upstream 1941779 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU240937 other upstream 2339581 1299364 ~ 1299606 (+) True G212403
TU240705 other upstream 3204981 433684 ~ 434206 (+) True G212184
TU243391 other downstream 160034 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other downstream 162505 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243390 other downstream 162586 3807695 ~ 3808739 (+) True CI01000050_03807697_03808793
TU243465 other downstream 305493 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243616 other downstream 462473 4107582 ~ 4108280 (+) True G214717

Expression Profile