RNA id: CI01000050_03528076_03531738.mRNA



Basic Information


Item Value
RNA id CI01000050_03528076_03531738.mRNA
length 1438
RNA type mRNA
GC content 0.37
exon number 2
gene id CI01000050_03528076_03531738
representative True

Chromosome Information


Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3527843 ~ 3532610 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATTAATACTCTTTTCAGCTATGTTAAGACTACATCTCTTAAAGCAGGGCTCTCTGGCTATCATTTCAGTAATGTTTAATATCCTGGCAATGCATACATTAATCATTTGTCTGTTTCAAAGATGTCAGGGGAAAAGCAAAAGAGTATTATTTAATTCTGGGCACCAAAGGGTCAGCCCCCTAAAAAGGTTGCCAGATCAGTGGAGGAGACAGTGGAAGAGGTGGAAGCAGAGATGGTGGAGAAGACCCTAAGGGAGACAGTTGTGGAGAAAGTAGAAGAGACCATAGAGGAAACAGTGGACAAGACAGGGAAGAAGAATGAAGCATTAAGTGGAACAGCCACCAGGTGTACTTTTAAAAGACTTCCTCACACCTCAGTCATACAACAAAAAGGCGTCATGCCTCAGACTAAAAGGCTTCTTTCATCGGACAAAACGGCATCGCGCCTCAGACTGAAAGGCTTCAGGTCTCAGGAAAAACAACGTCAGGTGTCAGGTCTCGTACAATTAGGCATCGAACGAAACAGGCTCAGACCAAAAGGCTTCAGAAGAAAAGGCATCGGATGAAACGGACTCAGACAAAAAGGCATCGGGCTAAAAGGCATCAGGTTTTTTTTTTTTTTTTTTTTTTTTTGTATTGCCTAACTTTCTATTGGCTTTTATCCCATCATAATGCCGTCCTTCAGTTGTCTTTTTCTTTACTGTTACTATTCCCAAATTGATGTAAGATGTGTGTGCGTGCATGTTAATTATGTAGAATCTATCTGATGATGGTATTCATGTAGGCTATTTATAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAACATACCGATTTTCACATTGGTCTGCAGAAAAACAGCAACGGGCTGAATGAAAATGTAAAATGTGACTCTTCCATCCAGATAGTGGTATTCTGTTTTTATTGTTGTTTTTATTTTTTATGCATTCCATTTTTATTCTAATGTATTTGTTTCCTTTTTATGTAAAGCACTTTGAATTACCATTGTGTATGAAATGTGCTAAATAAAATTGCCTTGCCTAATCGACTCTCCGACAGTAGGTGGCGCTGGAACAGAAGAAATAAAGCCGTTTCCCTGGTAACCTCTGTACACAAAGCAGCTCTGCTTATAACAACGCATTCAAATAGCTCGAATACCTCTTATAAAAATGAACCATGGTTTCACTACAAATAAAACAAAATGGTTATTGTAGTTGACCATGGTAACCACAAATTAACCATGGTTTTGCTACACTATAGTTTATGGTATTTGTAGTAAAATTATTGTTATATAAATAGTAGCCTATCAATCCGAGAAAAAAAAAAAAATCATAGTTACACACTTTTAACCATGGTTAATTTTCGTATGTGTTCACAATAGTTTGCAATGCAAGCTATTTGCAATATGTTATTTTGCTAACTTTTTATACATGCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU241640 lncRNA upstream 315989 3211584 ~ 3211854 (+) True G213019
TU241637 lncRNA upstream 326201 3199786 ~ 3201642 (+) True G213016
TU241614 lncRNA upstream 337104 3190519 ~ 3190739 (+) True G213000
TU241601 lncRNA upstream 352844 3174704 ~ 3174999 (+) True G212988
TU241599 lncRNA upstream 354889 3172624 ~ 3172954 (+) True G212986
TU241745 lncRNA downstream 17588 3550198 ~ 3550580 (+) True G213113
TU241791 lncRNA downstream 139282 3671892 ~ 3672877 (+) True G213153
TU243369 lncRNA downstream 195923 3728533 ~ 3728810 (+) True G214496
TU243373 lncRNA downstream 199358 3731968 ~ 3732173 (+) True G214500
TU243374 lncRNA downstream 205581 3738191 ~ 3738542 (+) True G214501
CI01000050_03448766_03465009.mRNA mRNA upstream 61976 3448766 ~ 3465867 (+) True CI01000050_03448766_03465009
CI01000050_03392003_03421994.mRNA mRNA upstream 104930 3392003 ~ 3422913 (+) True CI01000050_03392003_03421994
CI01000050_03306831_03324064.mRNA mRNA upstream 203599 3306831 ~ 3324244 (+) True CI01000050_03306831_03324064
CI01000050_03272821_03284544.mRNA mRNA upstream 243081 3272219 ~ 3284762 (+) True CI01000050_03272821_03284544
CI01000050_03238081_03239214.mRNA mRNA upstream 288529 3237717 ~ 3239314 (+) True CI01000050_03238081_03239214
CI01000050_03552033_03552887.mRNA mRNA downstream 18512 3551122 ~ 3552923 (+) True CI01000050_03552033_03552887
CI01000050_03557372_03567755.mRNA mRNA downstream 24717 3557327 ~ 3567979 (+) True CI01000050_03557372_03567755
CI01000050_03573096_03586434.mRNA mRNA downstream 40486 3573096 ~ 3587311 (+) True CI01000050_03573096_03586434
CI01000050_03599274_03618237.mRNA mRNA downstream 66664 3599274 ~ 3619040 (+) True CI01000050_03599274_03618237
CI01000050_03641769_03645039.mRNA mRNA downstream 106577 3639187 ~ 3645109 (+) True CI01000050_03641769_03645039
TU241503 other upstream 662021 2842819 ~ 2843139 (+) True G212938
TU241491 other upstream 752710 2774839 ~ 2775133 (+) True G212927
TU240958 other upstream 1830435 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU240937 other upstream 2228237 1299364 ~ 1299606 (+) True G212403
TU240705 other upstream 3093637 433684 ~ 434206 (+) True G212184
TU243391 other downstream 272533 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other downstream 275004 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243390 other downstream 275085 3807695 ~ 3808739 (+) True CI01000050_03807697_03808793
TU243465 other downstream 417992 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243616 other downstream 574972 4107582 ~ 4108280 (+) True G214717

Expression Profile