RNA id: CI01000050_03306831_03324064.mRNA



Basic Information


Item Value
RNA id CI01000050_03306831_03324064.mRNA
length 1671
RNA type mRNA
GC content 0.48
exon number 11
gene id CI01000050_03306831_03324064
representative True

Chromosome Information


Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3306831 ~ 3324244 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTCCGATGTGACGTTGAACATGACCGACTGAAAGTGGTAGCCCTGGCTGAGCCCACGCCGTTCACTCTTTATCCAGGGGAAAAACTGGAGCTGAGCTGTAAAGGTAAAGAGGAGACACAGGAAGTGACCTGGACTAAGGACCATGTGCCACTGGTTGACGGAGAGCACACCCGTCTGCGCGACCATCAGATGGAGATTGAAACAGTAGAGCCAGCCGACTCTGGTCTGTATGCTTGCTTTGCTCAGGGACCCAACAGCAACCATACAGATTACTTCAATGTCAACGTCACTGATGGATTGATTTCCTCAGAAGATGATGATGAAGATGAGTCTTCCTCAGAGGAGGCCAAGCTATCAAGTGACCAGAAGCTGCTTCCAATGGCGCCTGTCTGGGCTCATCCTGATAAGATGGAGAAGAAGCTCCACGCGGTTCCCGCCAGCAAAACTGTCAAGTTCCGTTGCCAGGCCAACGGTAACCCTACACCAACACTCAAGTGGCTCAAGAACGGCAAAGAGTTTAAGAAAGATCAGCGAATAGGAGGATTCAAGGTTCGAGAACACATGTGGACCATCATAATGGAGTCGGTGGTACCGGCAGACAAAGGAAACTACACCTGCCTGGTGGAAAACAAATATGGCAGCATCAATCACACCTACCAGCTGGATGTAGTCGTAGTGGTGGGTAGTGACGTGGAGTTTGAGTGTAAAGTCTTCAGCGATTCTCAGCCACACATCCAGTGGCTGAAACACATCGAGGTGGATGGCAGCAGAGTTGGCCCTGACGGACTGCCGTATGTTCGGATCTTGAAGACGGAAGGCGTCAATACTACGGTTAAGGAGATGGAGGTACTGCAGATCAGGAATGTGTCTTTAGAGGATGCTGGAGAGTACACCTGCTTGGCTGGGAACTCTGTCGGTCACTCCCATCACTCTGCATGGTTGACTGTCTATAAAGAAGTGCCGGCATCATGCTCCAGTTCAGCCTGGGCGGTCCTATACCTGTCTTCTGCACTGCCACCTGCCCTGGACTGTGTGTTTTTCCCCCTTATGAAATTTGCAGACAGTTTTCACTGGTGTGAAGAACATGGAGGAGCAGAGCTGTTTATGATTGATGACATGCTGGCTGGCAACTGCATTCGCAGACTTGACCCAGATGCAATGGCACCCTACTGTACTCATCCTGAGAAGATGAAGAAGCTATACACGGTTCAAACCAGTTATAACGTAATGTTCTATTGCCAGGCCAAAGGTAACCCTTACACCAACACTCAAGTGGCTCAAGAACAGCAAAGAGTTTACACGAAAAGGAGCCTTCGGGGCGTCAACACTACGGTTAAGGAGATGGAGATACTGCAGATCAGGAATGTGTCTTTAGATGATGCTAGAGAGTACACCTGCTTGACTGGGAACTCTATCGACGTCTACCGCCAGTCTGCATGGTTGACTGTCTATGAAGGTATCTTCGGTCCTTGCGTTGCTCTCTTTGGTTGACTGCGACAGTTCACACTGTGGTTTGAACACTTTGTATCACTGTAAAAAAAATCTTATTAAATTTATGGTAAAAAATTGGCAGCTGTTGTTGCCAGTGTAAAAAATGTGGTAGCCACATTTTAGGTTTTACCGATTTAACTTAAATTGACAGTAAAAAAAAAAAAAAAAAAATGTATTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU241640 lncRNA upstream 94977 3211584 ~ 3211854 (+) True G213019
TU241637 lncRNA upstream 105189 3199786 ~ 3201642 (+) True G213016
TU241614 lncRNA upstream 116092 3190519 ~ 3190739 (+) True G213000
TU241601 lncRNA upstream 131832 3174704 ~ 3174999 (+) True G212988
TU241599 lncRNA upstream 133877 3172624 ~ 3172954 (+) True G212986
TU241706 lncRNA downstream 122220 3446464 ~ 3545111 (+) True G213074
TU241745 lncRNA downstream 225954 3550198 ~ 3550580 (+) True G213113
TU241791 lncRNA downstream 347648 3671892 ~ 3672877 (+) True G213153
TU243369 lncRNA downstream 404289 3728533 ~ 3728810 (+) True G214496
TU243373 lncRNA downstream 407724 3731968 ~ 3732173 (+) True G214500
CI01000050_03272821_03284544.mRNA mRNA upstream 22069 3272219 ~ 3284762 (+) True CI01000050_03272821_03284544
CI01000050_03238081_03239214.mRNA mRNA upstream 67517 3237717 ~ 3239314 (+) True CI01000050_03238081_03239214
CI01000050_03224108_03230670.mRNA mRNA upstream 75670 3224057 ~ 3231161 (+) True CI01000050_03224108_03230670
CI01000050_03129712_03134758.mRNA mRNA upstream 171868 3129712 ~ 3134963 (+) True CI01000050_03129712_03134758
CI01000050_02995539_03115563.mRNA mRNA upstream 190753 2995539 ~ 3116078 (+) True CI01000050_02995539_03115563
CI01000050_03392003_03421994.mRNA mRNA downstream 67759 3392003 ~ 3422913 (+) True CI01000050_03392003_03421994
CI01000050_03448766_03465009.mRNA mRNA downstream 124522 3448766 ~ 3465867 (+) True CI01000050_03448766_03465009
CI01000050_03528076_03531738.mRNA mRNA downstream 203599 3527843 ~ 3532610 (+) True CI01000050_03528076_03531738
CI01000050_03552033_03552887.mRNA mRNA downstream 226878 3551122 ~ 3552923 (+) True CI01000050_03552033_03552887
CI01000050_03557372_03567755.mRNA mRNA downstream 233083 3557327 ~ 3567979 (+) True CI01000050_03557372_03567755
TU241503 other upstream 441009 2842819 ~ 2843139 (+) True G212938
TU241491 other upstream 531698 2774839 ~ 2775133 (+) True G212927
TU240958 other upstream 1609423 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU240937 other upstream 2007225 1299364 ~ 1299606 (+) True G212403
TU240705 other upstream 2872625 433684 ~ 434206 (+) True G212184
TU243391 other downstream 480899 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other downstream 483370 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243390 other downstream 483451 3807695 ~ 3808739 (+) True CI01000050_03807697_03808793
TU243465 other downstream 626358 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243616 other downstream 783338 4107582 ~ 4108280 (+) True G214717

Expression Profile