RNA id: TU241601


Basic Information

Item Value
RNA id TU241601
length 296
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G212988
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3174704 ~ 3174999 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCCTTTAAAGCTGCTGTGTGACAAGGTGTACAGCAAACAAGCTAAAAAAACCCAGAAGTTTGTATAAGCTACCGAAACGTAAAAGCCAGCCTTTAAGCAGACAAAAGTGGATACAGGCAATAAGACGTGAAGCATCAGCAGGAAGAATGGGTAGATTTTGGGATCCTGACACTCAGTATGCCTCAGTAAGCCTACGTGTGCAGTAAACATTTTGTCACTGTTAAGTCAAATATCCAAATGTCAGTTTTATATATTATATTTCCTGTCGCTGATTACGTTACCCTCCAGTCGGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU241599 lncRNA upstream 1750 3172624 ~ 3172954 (+) True G212986
TU241598 lncRNA upstream 6507 3167767 ~ 3168197 (+) True G212985
TU241593 lncRNA upstream 16249 3158126 ~ 3158455 (+) True G212980
TU241574 lncRNA upstream 180030 2994385 ~ 2994674 (+) True G212973
TU241571 lncRNA upstream 197268 2977209 ~ 2977436 (+) True G212970
TU241614 lncRNA downstream 15520 3190519 ~ 3190739 (+) True G213000
TU241637 lncRNA downstream 24787 3199786 ~ 3201642 (+) True G213016
TU241640 lncRNA downstream 36585 3211584 ~ 3211854 (+) True G213019
TU241706 lncRNA downstream 271465 3446464 ~ 3545111 (+) True G213074
TU241745 lncRNA downstream 375199 3550198 ~ 3550580 (+) True G213113
CI01000050_03129712_03134758.mRNA mRNA upstream 39741 3129712 ~ 3134963 (+) True CI01000050_03129712_03134758
CI01000050_02995539_03115563.mRNA mRNA upstream 58626 2995539 ~ 3116078 (+) True CI01000050_02995539_03115563
CI01000050_02978801_02980782.mRNA mRNA upstream 193922 2978801 ~ 2980782 (+) True CI01000050_02978801_02980782
CI01000050_02878198_02942065.mRNA mRNA upstream 231969 2878198 ~ 2942735 (+) True CI01000050_02878198_02942065
CI01000050_02852118_02864754.mRNA mRNA upstream 309807 2852118 ~ 2864897 (+) False CI01000050_02852118_02864754
CI01000050_03224108_03230670.mRNA mRNA downstream 49058 3224057 ~ 3231161 (+) True CI01000050_03224108_03230670
CI01000050_03238081_03239214.mRNA mRNA downstream 62718 3237717 ~ 3239314 (+) True CI01000050_03238081_03239214
CI01000050_03272821_03284544.mRNA mRNA downstream 97220 3272219 ~ 3284762 (+) True CI01000050_03272821_03284544
CI01000050_03306831_03324064.mRNA mRNA downstream 131832 3306831 ~ 3324244 (+) True CI01000050_03306831_03324064
CI01000050_03392003_03421994.mRNA mRNA downstream 217004 3392003 ~ 3422913 (+) True CI01000050_03392003_03421994
TU241503 other upstream 308882 2842819 ~ 2843139 (+) True G212938
TU241491 other upstream 399571 2774839 ~ 2775133 (+) True G212927
TU240958 other upstream 1477296 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU240937 other upstream 1875098 1299364 ~ 1299606 (+) True G212403
TU240705 other upstream 2740498 433684 ~ 434206 (+) True G212184
TU243391 other downstream 630144 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other downstream 632615 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243390 other downstream 632696 3807695 ~ 3808739 (+) True CI01000050_03807697_03808793
TU243465 other downstream 775603 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243616 other downstream 932583 4107582 ~ 4108280 (+) True G214717

Expression Profile