RNA id: TU241706



Basic Information


Item Value
RNA id TU241706
length 297
lncRNA type read_through
GC content 0.31
exon number 2
gene id G213074
representative True

Chromosome Information


Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3446464 ~ 3545111 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTTGTCACGAGTCTGAGTCGAGTGTCGAGTCATTTAAAAAAAAAAAAAAAAAACATACATACTGAGCTACTAAAACAATCTTTGTCATAGAGTACACTTGTTTGTTCACAATTTGAACATTCTTGCATCCATTTGTTTAATTTCAAGATCTGAGGTGAATTATCCATTGTTGCTTTTACTACAGCTACAAAGCTGGGAGCACTAAATGATATTCAAACTCACATTACATGCTTATAACATTAAATAAAGCACATAAACATTACCTGAGATTATCATTGCTATATTTTGTGTCGTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU241640 lncRNA upstream 234610 3211584 ~ 3211854 (+) True G213019
TU241637 lncRNA upstream 244822 3199786 ~ 3201642 (+) True G213016
TU241614 lncRNA upstream 255725 3190519 ~ 3190739 (+) True G213000
TU241601 lncRNA upstream 271465 3174704 ~ 3174999 (+) True G212988
TU241599 lncRNA upstream 273510 3172624 ~ 3172954 (+) True G212986
TU241745 lncRNA downstream 5087 3550198 ~ 3550580 (+) True G213113
TU241791 lncRNA downstream 126781 3671892 ~ 3672877 (+) True G213153
TU243369 lncRNA downstream 183422 3728533 ~ 3728810 (+) True G214496
TU243373 lncRNA downstream 186857 3731968 ~ 3732173 (+) True G214500
TU243374 lncRNA downstream 193080 3738191 ~ 3738542 (+) True G214501
CI01000050_03392003_03421994.mRNA mRNA upstream 23551 3392003 ~ 3422913 (+) True CI01000050_03392003_03421994
CI01000050_03306831_03324064.mRNA mRNA upstream 122220 3306831 ~ 3324244 (+) True CI01000050_03306831_03324064
CI01000050_03272821_03284544.mRNA mRNA upstream 161702 3272219 ~ 3284762 (+) True CI01000050_03272821_03284544
CI01000050_03238081_03239214.mRNA mRNA upstream 207150 3237717 ~ 3239314 (+) True CI01000050_03238081_03239214
CI01000050_03224108_03230670.mRNA mRNA upstream 215303 3224057 ~ 3231161 (+) True CI01000050_03224108_03230670
CI01000050_03552033_03552887.mRNA mRNA downstream 6011 3551122 ~ 3552923 (+) True CI01000050_03552033_03552887
CI01000050_03557372_03567755.mRNA mRNA downstream 12216 3557327 ~ 3567979 (+) True CI01000050_03557372_03567755
CI01000050_03573096_03586434.mRNA mRNA downstream 27985 3573096 ~ 3587311 (+) True CI01000050_03573096_03586434
CI01000050_03599274_03618237.mRNA mRNA downstream 54163 3599274 ~ 3619040 (+) True CI01000050_03599274_03618237
CI01000050_03641769_03645039.mRNA mRNA downstream 94076 3639187 ~ 3645109 (+) True CI01000050_03641769_03645039
TU241503 other upstream 580642 2842819 ~ 2843139 (+) True G212938
TU241491 other upstream 671331 2774839 ~ 2775133 (+) True G212927
TU240958 other upstream 1749056 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU240937 other upstream 2146858 1299364 ~ 1299606 (+) True G212403
TU240705 other upstream 3012258 433684 ~ 434206 (+) True G212184
TU243391 other downstream 260032 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other downstream 262503 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243390 other downstream 262584 3807695 ~ 3808739 (+) True CI01000050_03807697_03808793
TU243465 other downstream 405491 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243616 other downstream 562471 4107582 ~ 4108280 (+) True G214717

Expression Profile