RNA id: TU243374


Basic Information

Item Value
RNA id TU243374
length 352
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G214501
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3738191 ~ 3738542 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACACGCCACTATTTTTGAAAATAGGCTCATTTTCCAACTCCCCTAGAGTTAAACAGTTGAGTTTTACCGTTTTCGAATCCATTCAGCCGATCTCCGGGTCTGGCGGTAGCACTTTTAGCATAGCTTAGCATAGATCATTGAATCTGATTAGACCGTTAGCATCTCGCTCAAAAATGACCAAAGAGTTTCGATATTTTTCCTATTTAAAACTTGACTCTTCTGTAGTTACATCGTGTACTAAGACGGACGGAAAATGAAAAGTTGCGATTTTCTAGGCCGATATGGCTAGGAACTATACTGTCATTCCGGCGTAATAATCAAGGAACTTTGCTGTCGTACCATGGGTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243373 lncRNA upstream 6018 3731968 ~ 3732173 (+) True G214500
TU243369 lncRNA upstream 9381 3728533 ~ 3728810 (+) True G214496
TU241791 lncRNA upstream 65314 3671892 ~ 3672877 (+) True G213153
TU241745 lncRNA upstream 187611 3550198 ~ 3550580 (+) True G213113
TU241706 lncRNA upstream 193080 3446464 ~ 3545111 (+) True G213074
TU243376 lncRNA downstream 14500 3753042 ~ 3753268 (+) True G214503
TU243379 lncRNA downstream 19833 3758375 ~ 3762523 (+) True G214506
TU243430 lncRNA downstream 75365 3813907 ~ 3814213 (+) True CI01000050_03814516_03818892
TU243458 lncRNA downstream 104838 3843380 ~ 3843726 (+) True G214567
TU243497 lncRNA downstream 130738 3869280 ~ 3869506 (+) True G214601
CI01000050_03679119_03683710.mRNA mRNA upstream 54022 3679080 ~ 3684169 (+) True CI01000050_03679119_03683710
CI01000050_03641769_03645039.mRNA mRNA upstream 93082 3639187 ~ 3645109 (+) True CI01000050_03641769_03645039
CI01000050_03599274_03618237.mRNA mRNA upstream 119151 3599274 ~ 3619040 (+) True CI01000050_03599274_03618237
CI01000050_03573096_03586434.mRNA mRNA upstream 150880 3573096 ~ 3587311 (+) True CI01000050_03573096_03586434
CI01000050_03557372_03567755.mRNA mRNA upstream 170212 3557327 ~ 3567979 (+) True CI01000050_03557372_03567755
CI01000050_03807697_03808793.mRNA mRNA downstream 69155 3807697 ~ 3808870 (+) False CI01000050_03807697_03808793
CI01000050_03814516_03818892.mRNA mRNA downstream 74878 3813420 ~ 3818939 (+) False CI01000050_03814516_03818892
CI01000050_03938328_03956122.mRNA mRNA downstream 199786 3938328 ~ 3956854 (+) False CI01000050_03938328_03956122
CI01000050_03989489_04121180.mRNA mRNA downstream 249715 3988257 ~ 4121393 (+) False CI01000050_03989489_04121180
CI01000050_04122649_04127014.mRNA mRNA downstream 384107 4122649 ~ 4127045 (+) True CI01000050_04122649_04127014
TU241503 other upstream 872369 2842819 ~ 2843139 (+) True G212938
TU241491 other upstream 963058 2774839 ~ 2775133 (+) True G212927
TU240958 other upstream 2040783 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU240937 other upstream 2438585 1299364 ~ 1299606 (+) True G212403
TU240705 other upstream 3303985 433684 ~ 434206 (+) True G212184
TU243391 other downstream 66601 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other downstream 69072 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243390 other downstream 69153 3807695 ~ 3808739 (+) True CI01000050_03807697_03808793
TU243465 other downstream 212060 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243616 other downstream 369040 4107582 ~ 4108280 (+) True G214717

Expression Profile