RNA id: TU243497


Basic Information

Item Value
RNA id TU243497
length 227
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G214601
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3869280 ~ 3869506 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGTGCTCATTCATGGCTGTATTATTTAATTCATGCAAAGTTACATCTTTATTGGGACAGGACTTGACGGATTATCCTACGTGACTCTGTGAGCTTGTCTCTATTTCTTAGAGACAAGCTGCATAAACTAGCTACATTTCAGGCATTTATGTAACACATCTAATTTGTGCATTAATGGCTGTTATGTTAAATAAATTTTACTAATTACAGCAAAGCAGGTAAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243458 lncRNA upstream 25554 3843380 ~ 3843726 (+) True G214567
TU243430 lncRNA upstream 55067 3813907 ~ 3814213 (+) True CI01000050_03814516_03818892
TU243379 lncRNA upstream 106757 3758375 ~ 3762523 (+) True G214506
TU243376 lncRNA upstream 116012 3753042 ~ 3753268 (+) True G214503
TU243374 lncRNA upstream 130738 3738191 ~ 3738542 (+) True G214501
TU243501 lncRNA downstream 3649 3873155 ~ 3903728 (+) True G214605
TU243528 lncRNA downstream 35269 3904775 ~ 3905081 (+) True G214632
TU243471 lncRNA downstream 37603 3907109 ~ 3961365 (+) True G214575
TU243466 lncRNA downstream 43291 3912797 ~ 3917161 (+) False G214571
TU243467 lncRNA downstream 43291 3912797 ~ 3917161 (+) True G214571
CI01000050_03814516_03818892.mRNA mRNA upstream 50341 3813420 ~ 3818939 (+) False CI01000050_03814516_03818892
CI01000050_03807697_03808793.mRNA mRNA upstream 60410 3807697 ~ 3808870 (+) False CI01000050_03807697_03808793
CI01000050_03679119_03683710.mRNA mRNA upstream 185111 3679080 ~ 3684169 (+) True CI01000050_03679119_03683710
CI01000050_03641769_03645039.mRNA mRNA upstream 224171 3639187 ~ 3645109 (+) True CI01000050_03641769_03645039
CI01000050_03599274_03618237.mRNA mRNA upstream 250240 3599274 ~ 3619040 (+) True CI01000050_03599274_03618237
CI01000050_03938328_03956122.mRNA mRNA downstream 68822 3938328 ~ 3956854 (+) False CI01000050_03938328_03956122
CI01000050_03989489_04121180.mRNA mRNA downstream 118751 3988257 ~ 4121393 (+) False CI01000050_03989489_04121180
CI01000050_04122649_04127014.mRNA mRNA downstream 253143 4122649 ~ 4127045 (+) True CI01000050_04122649_04127014
CI01000050_04159232_04161131.mRNA mRNA downstream 289505 4159011 ~ 4161131 (+) True CI01000050_04159232_04161131
CI01000050_04190820_04204792.mRNA mRNA downstream 321314 4190820 ~ 4205923 (+) True CI01000050_04190820_04204792
TU243391 other upstream 60541 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other upstream 60541 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243390 other upstream 60541 3807695 ~ 3808739 (+) True CI01000050_03807697_03808793
TU241503 other upstream 1003458 2842819 ~ 2843139 (+) True G212938
TU241491 other upstream 1094147 2774839 ~ 2775133 (+) True G212927
TU243465 other downstream 81096 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243616 other downstream 238076 4107582 ~ 4108280 (+) True G214717
TU243790 other downstream 722049 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU244350 other downstream 1538079 5409444 ~ 5409648 (+) True G215383
TU244520 other downstream 1760104 5629610 ~ 5631012 (+) False G215539

Expression Profile