RNA id: TU243376


Basic Information

Item Value
RNA id TU243376
length 227
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G214503
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3753042 ~ 3753268 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCCTCCTGGAGATGTGATGCCAGCTGTGCCAGCTGCTGCTCACTAATCTTCATCAGCAACTGAAACAAAGAAACTACTGTTTATACACACAGTTTTTGCACTGCAATAATACTGTAATAATATCCATTTCACATATATCAAAATGTAGATTTATTGAAATGACAATTTTATTCAAGTCTGCATACTTGCAGACTGGTGTGCAAGCAGCCTTGCCATATCCTAAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243374 lncRNA upstream 14500 3738191 ~ 3738542 (+) True G214501
TU243373 lncRNA upstream 20869 3731968 ~ 3732173 (+) True G214500
TU243369 lncRNA upstream 24232 3728533 ~ 3728810 (+) True G214496
TU241791 lncRNA upstream 80165 3671892 ~ 3672877 (+) True G213153
TU241745 lncRNA upstream 202462 3550198 ~ 3550580 (+) True G213113
TU243379 lncRNA downstream 5107 3758375 ~ 3762523 (+) True G214506
TU243430 lncRNA downstream 60639 3813907 ~ 3814213 (+) True CI01000050_03814516_03818892
TU243458 lncRNA downstream 90112 3843380 ~ 3843726 (+) True G214567
TU243497 lncRNA downstream 116012 3869280 ~ 3869506 (+) True G214601
TU243501 lncRNA downstream 119887 3873155 ~ 3903728 (+) True G214605
CI01000050_03679119_03683710.mRNA mRNA upstream 68873 3679080 ~ 3684169 (+) True CI01000050_03679119_03683710
CI01000050_03641769_03645039.mRNA mRNA upstream 107933 3639187 ~ 3645109 (+) True CI01000050_03641769_03645039
CI01000050_03599274_03618237.mRNA mRNA upstream 134002 3599274 ~ 3619040 (+) True CI01000050_03599274_03618237
CI01000050_03573096_03586434.mRNA mRNA upstream 165731 3573096 ~ 3587311 (+) True CI01000050_03573096_03586434
CI01000050_03557372_03567755.mRNA mRNA upstream 185063 3557327 ~ 3567979 (+) True CI01000050_03557372_03567755
CI01000050_03807697_03808793.mRNA mRNA downstream 54429 3807697 ~ 3808870 (+) False CI01000050_03807697_03808793
CI01000050_03814516_03818892.mRNA mRNA downstream 60152 3813420 ~ 3818939 (+) False CI01000050_03814516_03818892
CI01000050_03938328_03956122.mRNA mRNA downstream 185060 3938328 ~ 3956854 (+) False CI01000050_03938328_03956122
CI01000050_03989489_04121180.mRNA mRNA downstream 234989 3988257 ~ 4121393 (+) False CI01000050_03989489_04121180
CI01000050_04122649_04127014.mRNA mRNA downstream 369381 4122649 ~ 4127045 (+) True CI01000050_04122649_04127014
TU241503 other upstream 887220 2842819 ~ 2843139 (+) True G212938
TU241491 other upstream 977909 2774839 ~ 2775133 (+) True G212927
TU240958 other upstream 2055634 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU240937 other upstream 2453436 1299364 ~ 1299606 (+) True G212403
TU240705 other upstream 3318836 433684 ~ 434206 (+) True G212184
TU243391 other downstream 51875 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other downstream 54346 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243390 other downstream 54427 3807695 ~ 3808739 (+) True CI01000050_03807697_03808793
TU243465 other downstream 197334 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243616 other downstream 354314 4107582 ~ 4108280 (+) True G214717

Expression Profile