RNA id: TU243458


Basic Information

Item Value
RNA id TU243458
length 347
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G214567
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3843380 ~ 3843726 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGACAGAGGCAAGAGAAGTGATACTTCCTCATTCATAATACCGCAATTATAATCTTATGCATTCTACAGCGCAGTGATTGGATTGAATGAGCTTTATGTCATGAATAAATGCAGAAACGGTTGACGTCAGCATGTTCGACCAGCCCATACTGGAGCCACTCAGCACTCCGGATCTTGCCGCTAGTACACAATGACGTCAGATTTTGTGACGTTGCTCCGACTTTGCTTTTCAAACCGGAAGACAGAAATCGCTCTGAAAAATGCAAAAATAACTAATTTCAACTTTTAAATAAAATGAATGAGTACCTTTAGTGTTTTCAATGATGTGCAGCCTATACATATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243430 lncRNA upstream 29167 3813907 ~ 3814213 (+) True CI01000050_03814516_03818892
TU243379 lncRNA upstream 80857 3758375 ~ 3762523 (+) True G214506
TU243376 lncRNA upstream 90112 3753042 ~ 3753268 (+) True G214503
TU243374 lncRNA upstream 104838 3738191 ~ 3738542 (+) True G214501
TU243373 lncRNA upstream 111207 3731968 ~ 3732173 (+) True G214500
TU243497 lncRNA downstream 25554 3869280 ~ 3869506 (+) True G214601
TU243501 lncRNA downstream 29429 3873155 ~ 3903728 (+) True G214605
TU243528 lncRNA downstream 61049 3904775 ~ 3905081 (+) True G214632
TU243471 lncRNA downstream 63383 3907109 ~ 3961365 (+) True G214575
TU243466 lncRNA downstream 69071 3912797 ~ 3917161 (+) False G214571
CI01000050_03814516_03818892.mRNA mRNA upstream 24441 3813420 ~ 3818939 (+) False CI01000050_03814516_03818892
CI01000050_03807697_03808793.mRNA mRNA upstream 34510 3807697 ~ 3808870 (+) False CI01000050_03807697_03808793
CI01000050_03679119_03683710.mRNA mRNA upstream 159211 3679080 ~ 3684169 (+) True CI01000050_03679119_03683710
CI01000050_03641769_03645039.mRNA mRNA upstream 198271 3639187 ~ 3645109 (+) True CI01000050_03641769_03645039
CI01000050_03599274_03618237.mRNA mRNA upstream 224340 3599274 ~ 3619040 (+) True CI01000050_03599274_03618237
CI01000050_03938328_03956122.mRNA mRNA downstream 94602 3938328 ~ 3956854 (+) False CI01000050_03938328_03956122
CI01000050_03989489_04121180.mRNA mRNA downstream 144531 3988257 ~ 4121393 (+) False CI01000050_03989489_04121180
CI01000050_04122649_04127014.mRNA mRNA downstream 278923 4122649 ~ 4127045 (+) True CI01000050_04122649_04127014
CI01000050_04159232_04161131.mRNA mRNA downstream 315285 4159011 ~ 4161131 (+) True CI01000050_04159232_04161131
CI01000050_04190820_04204792.mRNA mRNA downstream 347094 4190820 ~ 4205923 (+) True CI01000050_04190820_04204792
TU243391 other upstream 34641 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other upstream 34641 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243390 other upstream 34641 3807695 ~ 3808739 (+) True CI01000050_03807697_03808793
TU241503 other upstream 977558 2842819 ~ 2843139 (+) True G212938
TU241491 other upstream 1068247 2774839 ~ 2775133 (+) True G212927
TU243465 other downstream 106876 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243616 other downstream 263856 4107582 ~ 4108280 (+) True G214717
TU243790 other downstream 747829 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU244350 other downstream 1563859 5409444 ~ 5409648 (+) True G215383
TU244520 other downstream 1785884 5629610 ~ 5631012 (+) False G215539

Expression Profile