RNA id: CI01000050_03989489_04121180.mRNA


Basic Information

Item Value
RNA id CI01000050_03989489_04121180.mRNA
length 2372
RNA type mRNA
GC content 0.41
exon number 7
gene id CI01000050_03989489_04121180
representative False

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3988257 ~ 4121393 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAAAAAGTTTACCTAACTTAAAAAAATTAAGGCAATCTATTACAATCAATTTGTTAAGGATACCTCAACTAACAACTGACAACTAAAATACCTTTGGTTATGTAGTGATTTTTACTCCATTCACCAGTGACGTAGTGATTTTTGATCACGTGTCACTTAAGGTGTGGTTATGAGTGTATCAGATGACCCCTCCCCCCCTTTTGTAATACGGGGCACCATTTAAGAATACTATCTTAACAATTTAAGAACACTCCAAAAGAGCTGTTCAATAATTCAGAATTAACATAAACTGGAGGGAGTCGGTCAACTGATTTATCTGAAGGATTTGCGAGAGTCTGACCAACTAGTAGAGTCTTTGATCATCAACACAAGGAAGACACAGTTATAATAAAATCAATGAAATTTATTAACAATAGATATGCAAGAGTAAATACCACAACGATTAATAATGAAATAATGAATATGCACTTCTAAAAGATAGTAAAATAATAATCAAAGGAAAATACTGAATTAAATCAAAGCAACAAATAAATGAAGTGAACACAGAATGGATAAATGCAATGCTGTTGAACTGAATGTAGAATGGAAGAGAACTGTATGGGAATGCTTCTTATGGAAGCCACCTAATGGCTCTGGTAAAATGGTGATAAATAATTGCTTATTTATCATTCAACAAATAATATCCCTATTATTTGTAACAAGCTGACCTCAAGTAACTGTTATCTAAACAGATTAGAAAAACATATGCTGCATGTATAAACTAATGCCAAGGTCTCTAGAAAGAGGTTTGGTAAGTTTATATTTACGTTCCACACAGTCGGGTGATCAATCCGGTAGCAGAGACGTCTTCCACTGATGATGCAGGCTGCGTGCAGTGGGAGGGCGCGGAGTTGCGATCCAGTAGTCGTGCAACGCTGGGCTGGAGGATGCTGAACTTCGGTTGCGCCAAGAGGGTCCTTTAGGATGGACTGGGCAGCTGGGTCAGATGAATCTTCACAGGTTCCTTTGCAGGCTGGCTGCGTCGCTGAGGAGCCGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGGGCTGGAGGATGCTGAACTTCGGTTGCGCCAAGAGGGTCCTTTAGGATGGACTGGGCAGCTGGGTCAGATGAATCTTCACAGGTTCCTTTGCAGGCTGGCTGCGTCGCTGAGGAGCCGTGTGGTACAGGCAATGTCTGCCAATGCAGAGGTCCTTTACGGACTGGGCTGCGCTGCTGTAGGAGCCCATTGAAGTATCAAATTAAGGAAGCAGAGACACGTACACGGCACATATGGAATCTAACACATGCAGCATTGTACTCTTGCGTGGATCTCAGCTGCAGAAATATGTTTCTGCCTCCAAGCCAGAAGACTGACCAGATTGGAGAGGAGAAGAAATACACTTTATTAATGGTGGACCCAGATGCTCCAAGTCGTAAGAAACCCTCTCGTGCTTACTGGAGACACTGGTTACTGGCTGACATTAAGCTACCCGAGACACCGTTCGCCGCCACTGGTCCGCTCACTTCTCCGCGAACGCCCAACCCGACAGATTTACCGACATATGCAGGGCTTGTTGTTTTCGAAGTAGTTCATTTGCAGACGTGTGCTGCTAACCTCACAAGCCACCTGTATCTTTCTGAGAGACGGAATGCTGGTCCTCCAGGTGTAAATGTCATGAAAAATAGGTGTGACTCTTTCCCAGTGATCCACTGTGGAACTGCCCACCCACTCCACCGGGGGAAGCGCTCAAGACAGGAGATGTCAGAGGCATTGAACTATCCGCTCTCTAAACCGGAACCTTGCGAACCAAATACAGACAGCGAGGGGCGTGGCCGGATCAAGGCCTTATTTGGAGTTTCCACTTCAGTGGCGAACTTGGCGCTCGAGGCCAAAGCCAAGCCTACAGATTTGCCGCGCGCCTGCAGTATTTACACGCGATTAACTCTCTGGCAGTTACAGTCTTTGTACAGCCCAGTCTCAGTTACCGTTGCTTCTTCTGTTCTTGATCATCTGTTGCAGTCAATTGCTTAAACCACTTAGTTGACGTTTACAAATGATTAATTTGGGGTTTTATTTTTTATTTAACTCTCAACACAAACCATTGAGCAGAAAAACAGTCTCCTCCAGTCTCCATTAATCACTACATTCTCATGATATTCTATTCTCACGGGTCTATGACCTTTATATGGACAGTCTGACAACCCACACTGACTGAGAATAGGCTATAAAATATCATTTGTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243471 lncRNA upstream 26892 3907109 ~ 3961365 (+) True G214575
TU243473 lncRNA upstream 48118 3931890 ~ 3940139 (+) False CI01000050_03938328_03956122
TU243466 lncRNA upstream 71096 3912797 ~ 3917161 (+) False G214571
TU243467 lncRNA upstream 71096 3912797 ~ 3917161 (+) True G214571
TU243528 lncRNA upstream 83176 3904775 ~ 3905081 (+) True G214632
TU243658 lncRNA downstream 144975 4266368 ~ 4266683 (+) True G214754
TU243671 lncRNA downstream 145711 4267104 ~ 4267427 (+) True G214767
TU243674 lncRNA downstream 149872 4271265 ~ 4271510 (+) True G214770
TU243675 lncRNA downstream 150195 4271588 ~ 4271847 (+) True G214771
TU243703 lncRNA downstream 230942 4352335 ~ 4352724 (+) True G214798
CI01000050_03938328_03956122.mRNA mRNA upstream 31403 3938328 ~ 3956854 (+) False CI01000050_03938328_03956122
CI01000050_03814516_03818892.mRNA mRNA upstream 169318 3813420 ~ 3818939 (+) False CI01000050_03814516_03818892
CI01000050_03807697_03808793.mRNA mRNA upstream 179387 3807697 ~ 3808870 (+) False CI01000050_03807697_03808793
CI01000050_03679119_03683710.mRNA mRNA upstream 304088 3679080 ~ 3684169 (+) True CI01000050_03679119_03683710
CI01000050_03641769_03645039.mRNA mRNA upstream 343148 3639187 ~ 3645109 (+) True CI01000050_03641769_03645039
CI01000050_04122649_04127014.mRNA mRNA downstream 1256 4122649 ~ 4127045 (+) True CI01000050_04122649_04127014
CI01000050_04159232_04161131.mRNA mRNA downstream 37618 4159011 ~ 4161131 (+) True CI01000050_04159232_04161131
CI01000050_04190820_04204792.mRNA mRNA downstream 69427 4190820 ~ 4205923 (+) True CI01000050_04190820_04204792
CI01000050_04275924_04277061.mRNA mRNA downstream 154531 4275924 ~ 4277647 (+) True CI01000050_04275924_04277061
CI01000050_04281992_04287535.mRNA mRNA downstream 160599 4281992 ~ 4287802 (+) True CI01000050_04281992_04287535
TU243465 other upstream 31213 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243391 other upstream 179518 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other upstream 179518 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243390 other upstream 179518 3807695 ~ 3808739 (+) True CI01000050_03807697_03808793
TU241503 other upstream 1122435 2842819 ~ 2843139 (+) True G212938
TU243790 other downstream 470162 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU244350 other downstream 1286192 5409444 ~ 5409648 (+) True G215383
TU244520 other downstream 1508217 5629610 ~ 5631012 (+) False G215539
TU244521 other downstream 1508217 5629610 ~ 5631203 (+) True G215539
TU244783 other downstream 2539795 6661188 ~ 6665703 (+) True G215773

Expression Profile