RNA id: TU243675


Basic Information

Item Value
RNA id TU243675
length 260
lncRNA type intronic
GC content 0.35
exon number 1
gene id G214771
representative True

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 4271588 ~ 4271847 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACAGTCAGAAATTATCTTCATAGGAAATTAATGGGAAATTCGAAAAATATGAAAAAGGAGATTTTTTGGGGGGGATTGGGGGGTTACAATATACAAATGCAGGGATGCAGGAAAGCCACAATGCAGGAAAAAAAGCACACAGCCATGAAGGGATGACACTCTATTATCAAGAGTGCAAAATTGATGTTATATGTATCAAAATGTCTTTCTCTGTGTTCATACTTAACTGTAGTAAAATTAATGGAAAAACTGACACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243674 lncRNA upstream 78 4271265 ~ 4271510 (+) True G214770
TU243671 lncRNA upstream 4161 4267104 ~ 4267427 (+) True G214767
TU243658 lncRNA upstream 4905 4266368 ~ 4266683 (+) True G214754
TU243629 lncRNA upstream 150210 4121051 ~ 4121378 (+) True CI01000050_03989489_04121180
TU243626 lncRNA upstream 154479 4116809 ~ 4117109 (+) True G214727
TU243703 lncRNA downstream 80488 4352335 ~ 4352724 (+) True G214798
TU243701 lncRNA downstream 179451 4451298 ~ 4474391 (+) True G214796
TU243727 lncRNA downstream 200984 4472831 ~ 4512459 (+) True G214822
TU243700 lncRNA downstream 234912 4506759 ~ 4543037 (+) True G214795
TU243692 lncRNA downstream 236648 4508495 ~ 4508867 (+) True G214787
CI01000050_04190820_04204792.mRNA mRNA upstream 65665 4190820 ~ 4205923 (+) True CI01000050_04190820_04204792
CI01000050_04159232_04161131.mRNA mRNA upstream 110457 4159011 ~ 4161131 (+) True CI01000050_04159232_04161131
CI01000050_04122649_04127014.mRNA mRNA upstream 144543 4122649 ~ 4127045 (+) True CI01000050_04122649_04127014
CI01000050_03989489_04121180.mRNA mRNA upstream 150195 3988257 ~ 4121393 (+) False CI01000050_03989489_04121180
CI01000050_03938328_03956122.mRNA mRNA upstream 314734 3938328 ~ 3956854 (+) False CI01000050_03938328_03956122
CI01000050_04275924_04277061.mRNA mRNA downstream 4077 4275924 ~ 4277647 (+) True CI01000050_04275924_04277061
CI01000050_04281992_04287535.mRNA mRNA downstream 10145 4281992 ~ 4287802 (+) True CI01000050_04281992_04287535
CI01000050_04303341_04330327.mRNA mRNA downstream 31494 4303341 ~ 4331241 (+) True CI01000050_04303341_04330327
CI01000050_04406761_04429903.mRNA mRNA downstream 134914 4406761 ~ 4429903 (+) True CI01000050_04406761_04429903
CI01000050_04430129_04436139.mRNA mRNA downstream 158132 4429979 ~ 4437457 (+) True CI01000050_04430129_04436139
TU243616 other upstream 163308 4107582 ~ 4108280 (+) True G214717
TU243465 other upstream 314544 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243391 other upstream 462849 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243790 other downstream 319708 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU244350 other downstream 1135738 5409444 ~ 5409648 (+) True G215383
TU244520 other downstream 1357763 5629610 ~ 5631012 (+) False G215539
TU244521 other downstream 1357763 5629610 ~ 5631203 (+) True G215539
TU244783 other downstream 2389341 6661188 ~ 6665703 (+) True G215773

Expression Profile