Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU243700 |
| length | 834 |
| lncRNA type | antisense_over |
| GC content | 0.43 |
| exon number | 2 |
| gene id | G214795 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 4506759 ~ 4543037 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU243701 | lncRNA | upstream | 32368 | 4451298 ~ 4474391 (+) | True | G214796 |
| TU243703 | lncRNA | upstream | 154035 | 4352335 ~ 4352724 (+) | True | G214798 |
| TU243675 | lncRNA | upstream | 234912 | 4271588 ~ 4271847 (+) | True | G214771 |
| TU243674 | lncRNA | upstream | 235249 | 4271265 ~ 4271510 (+) | True | G214770 |
| TU243671 | lncRNA | upstream | 239332 | 4267104 ~ 4267427 (+) | True | G214767 |
| TU243778 | lncRNA | downstream | 4533 | 4547570 ~ 4547900 (+) | True | G214862 |
| TU243784 | lncRNA | downstream | 16543 | 4559580 ~ 4560196 (+) | True | G214868 |
| TU243689 | lncRNA | downstream | 28794 | 4571831 ~ 4573556 (+) | True | G214784 |
| TU243791 | lncRNA | downstream | 45652 | 4588689 ~ 4589499 (+) | True | G214875 |
| TU243793 | lncRNA | downstream | 55935 | 4598972 ~ 4601810 (+) | False | G214877 |
| CI01000050_04430129_04436139.mRNA | mRNA | upstream | 69302 | 4429979 ~ 4437457 (+) | True | CI01000050_04430129_04436139 |
| CI01000050_04406761_04429903.mRNA | mRNA | upstream | 76856 | 4406761 ~ 4429903 (+) | True | CI01000050_04406761_04429903 |
| CI01000050_04303341_04330327.mRNA | mRNA | upstream | 175518 | 4303341 ~ 4331241 (+) | True | CI01000050_04303341_04330327 |
| CI01000050_04281992_04287535.mRNA | mRNA | upstream | 218957 | 4281992 ~ 4287802 (+) | True | CI01000050_04281992_04287535 |
| CI01000050_04275924_04277061.mRNA | mRNA | upstream | 229112 | 4275924 ~ 4277647 (+) | True | CI01000050_04275924_04277061 |
| CI01000050_04591548_04592778.mRNA | mRNA | downstream | 46889 | 4589926 ~ 4592878 (+) | False | CI01000050_04591548_04592778 |
| CI01000050_04617015_04691858.mRNA | mRNA | downstream | 73700 | 4616737 ~ 4691974 (+) | True | CI01000050_04617015_04691858 |
| CI01000050_04700488_04701991.mRNA | mRNA | downstream | 157307 | 4700344 ~ 4702040 (+) | True | CI01000050_04700488_04701991 |
| CI01000050_04759894_04762802.mRNA | mRNA | downstream | 216857 | 4759894 ~ 4763101 (+) | False | CI01000050_04759894_04762802 |
| CI01000050_04865991_04906702.mRNA | mRNA | downstream | 322869 | 4865906 ~ 4907415 (+) | True | CI01000050_04865991_04906702 |
| TU243616 | other | upstream | 398479 | 4107582 ~ 4108280 (+) | True | G214717 |
| TU243465 | other | upstream | 549715 | 3950602 ~ 3957044 (+) | True | CI01000050_03938328_03956122 |
| TU243391 | other | upstream | 698020 | 3805143 ~ 3808739 (+) | False | CI01000050_03807697_03808793 |
| TU243790 | other | downstream | 48518 | 4591555 ~ 4593049 (+) | True | CI01000050_04591548_04592778 |
| TU244350 | other | downstream | 864548 | 5409444 ~ 5409648 (+) | True | G215383 |
| TU244520 | other | downstream | 1086573 | 5629610 ~ 5631012 (+) | False | G215539 |
| TU244521 | other | downstream | 1086573 | 5629610 ~ 5631203 (+) | True | G215539 |
| TU244783 | other | downstream | 2118151 | 6661188 ~ 6665703 (+) | True | G215773 |
