RNA id: CI01000050_04759894_04762802.mRNA


Basic Information

Item Value
RNA id CI01000050_04759894_04762802.mRNA
length 1787
RNA type mRNA
GC content 0.53
exon number 9
gene id CI01000050_04759894_04762802
representative False

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 4759823 ~ 4763101 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGGACAGCGAGTTTGTAAAGTGAGTCCGATGATTGGCGAGGTGTACGATGAACATCCAAGTACACCCCCAAAACCCAGCATCAACACGGCGGTTCAACATCCTCATCCTCGCGATGAGACCCCTGTTGGTGCTGGGAGAGTGCAGGAGAAAAGAAAGAGGAAGAAAAAGTGGTGGAGGAGGCTGACCTCTTTCTTCAGAGCTGCCAAAAAACATCCTCCAGAGAGCAGCTCAGGTCAGGGAGAGGTGAAGCTGCAGCAGGATGAGGGAGAGAAGAGGAAGGTAGCATGGGCAGGAAGAAGTAGTGATGACTACATCTTCAGCCGCTACAGTGTTGGCGATCAGCTTGGGAAAGGTGGTTTTGGTGTGGTGTATGAAGGGAGACGTTTGGATGATGATCTTAAAGTGGCTTTGAAATATGTCACGAAGACCAGGGACACAAAATGTTTATCAATTCCTGATCATCCAAACCCCCTTCCAAGAGAGATCGCCCTCACCATCCTGGCGAATAAAGGTCCCAGCACGCCAGAGATCATCAGGCTGCTGGACTGGCAGGACCGCCCTGACCACTTCGTAATGGTCCTCGAATGTCCCTCTCCCTGTGAGGATCTCGTTCAGTTCATGAAGCGTCACGGTGGGAGACTCAACGAAGAGAAAACAAGGCAAATCATGCGGCAGGCGACTCAAGCGGCAAACATGTGCTGCCTTCGTGGAGTACTCCACCGGGACATAAAACTGAACAACCTATTAATTAACAGTGAGACATCCGAAGTCAAGCTGATTGATTTCGGATGTGGGGACATATTGAGGAGTTCGCCATACAGGTCATACTCTGGCACAGCAGTGTACTCCCCTCCAGAGTACTATGTGAGGGGGATGTATTATGGCAGGCAGGCGACGGCATGGTCACTTGGGGTTTTGATGTTTGTAATGTTATGCGGACATTACCCAAGTGACTATGACCTGCTGCTCCTTAAACGGAAGCTCTGGTCCAAACCTGGCTTGTCAACAGGTCGTCACATAAGGCCACTCCAGTTGGCGTCTCTCATGGCAGCTTGGCGTCTTGCGGGCTGCAATAGGAGACGCTTCCATCCCTCCTCTCGCCTTTACATCTTGTGGGGCGAGCAAGCCTCGTGTTGCGTCTTGCGCCTTGACTTGAGGGAACAGTATTTGCGTCTGGCGGTACTGCTCCCGGAGGGCTGGGAGACGCTTCCATCCCTCCTCTCGCCTTTGCGTCTTGCTGGAGCTCCTTTCTCAACCACCTTGATGCCAGCCACAGATATTCCTGCAAAGGCCCCAGCCAGAGCAAGCACCAAAGGCCCTCTGGTCCCAGATATTCCAGTCATTCCAGTCTGTCAAACCTCAGAGATTCCTCCTATGGCCACTCGAAAGGTTTCTGTGATGGCCAACTCATGTCTGCTCCAGTCACTCAAGAGGTTCCTGCCCAGGTTCCTTGTCTTGGCTAGCTCTCTGTCTCAACCGCCCTGATGCCAGTACTCCCAGTTTTGGCAGCCCCAGTGATTCCTGCCACAGGCACTTCAAAGGCTCCTGTTGTTGCCTCAAGGTCGTCTCAGTCACCCTGGTCTCTAAGCTTCCTGTCATGACTGCCTGGTCCTAGACGTTCTTGTCACGGCTGCCTCAGTGGCTGTTCAAATGCCAGATCTCGTCCCAGTGGCAGGTGTTCATGTCATGGCTGCCCCAGATGTCCAGGTATCAGAGCTCCCCATTTCATCCACCCTCGTGTCAGAGCTCTTGGTGTCCAACCAGCCAGTAAAAGCAAATCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244269 lncRNA upstream 10983 4748641 ~ 4748911 (+) True G215309
TU243858 lncRNA upstream 51965 4705921 ~ 4707929 (+) False G214930
TU243859 lncRNA upstream 51965 4705921 ~ 4707929 (+) True G214930
TU243793 lncRNA upstream 158084 4598972 ~ 4601810 (+) False G214877
TU243794 lncRNA upstream 158084 4598972 ~ 4601810 (+) True G214877
TU244279 lncRNA downstream 7838 4770939 ~ 4779258 (+) True G215319
TU244295 lncRNA downstream 47128 4810229 ~ 4853411 (+) True G215332
TU244328 lncRNA downstream 83301 4846402 ~ 4847209 (+) True G215361
TU244347 lncRNA downstream 160501 4923602 ~ 4923836 (+) True G215380
TU244325 lncRNA downstream 303705 5066806 ~ 5089579 (+) True G215358
CI01000050_04700488_04701991.mRNA mRNA upstream 57854 4700344 ~ 4702040 (+) True CI01000050_04700488_04701991
CI01000050_04617015_04691858.mRNA mRNA upstream 67920 4616737 ~ 4691974 (+) True CI01000050_04617015_04691858
CI01000050_04591548_04592778.mRNA mRNA upstream 167016 4589926 ~ 4592878 (+) False CI01000050_04591548_04592778
CI01000050_04430129_04436139.mRNA mRNA upstream 322437 4429979 ~ 4437457 (+) True CI01000050_04430129_04436139
CI01000050_04406761_04429903.mRNA mRNA upstream 329991 4406761 ~ 4429903 (+) True CI01000050_04406761_04429903
CI01000050_04865991_04906702.mRNA mRNA downstream 102805 4865906 ~ 4907415 (+) True CI01000050_04865991_04906702
CI01000050_05014220_05023731.mRNA mRNA downstream 251119 5014220 ~ 5024172 (+) True CI01000050_05014220_05023731
CI01000050_05027317_05033248.mRNA mRNA downstream 264216 5027317 ~ 5033302 (+) True CI01000050_05027317_05033248
CI01000050_05034897_05045722.mRNA mRNA downstream 271796 5034897 ~ 5045957 (+) True CI01000050_05034897_05045722
CI01000050_05069414_05117314.mRNA mRNA downstream 306313 5069414 ~ 5117314 (+) True CI01000050_05069414_05117314
TU243790 other upstream 166845 4591555 ~ 4593049 (+) True CI01000050_04591548_04592778
TU243616 other upstream 651614 4107582 ~ 4108280 (+) True G214717
TU243465 other upstream 802850 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122
TU243394 other upstream 951155 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU244350 other downstream 644484 5409444 ~ 5409648 (+) True G215383
TU244520 other downstream 866509 5629610 ~ 5631012 (+) False G215539
TU244521 other downstream 866509 5629610 ~ 5631203 (+) True G215539
TU244783 other downstream 1898087 6661188 ~ 6665703 (+) True G215773

Expression Profile