G215358


Basic Information

Item Value
gene id G215358
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 5066806 ~ 5089579 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU244325
ACAGAGTCAGGGTACAGGCAAGGATCAGGGCAGGCAGCAAACAATCACAGTCCAGGAAACAGGCAAAGATCAGGGTAGGCAGCAAAGGGTCGCAGGGAATAAACAGTCCAATCGGTAACAGATAAACAGTCCACAGAAACACGCTCAGAAATGATCACCTCGGCAAATCAAGACTTCGCGATGTGTGTGTGTGTGAGTGTGTCTTATATAGTGTGAGTGTGATGCGGTGCAGGTGTGTGTGCAATCAGTCCCAGGAGTGAGGGCCCATGGGAAACGTAGTCCGAATGAGAACTGATCAGTATTCCGGTGATGGCTCCCTCCGGTGGTCCGGAGGAGGGGCCGAAGGAGCCATATTCGTGACACTACCACTCAGAACCTCTTAGCAACCACATAGCAACACCCTATCACACCTATAACACAACCATAAATAACACCCTGCATTGTGGCAACACAGTAACTACAACTCAGAACACCTTAGCAAGCACAAACAGCACCCTATAGCATTGTGGCAACACACCAACAATTACTCAGAACACCTTAGTAACCATAAAGCAACCCTCTAGCAACCACAAATAACACCCTAGCATTGTGTTTAACATTTATAATTGCAAAATTATGATTTTTTTCTTCTCTCCCTTTCTTGTACATATTTCTCTTATTTCATATGACAATAAATTATATTATAAACATTTTTAATGATGTAATGTAAAATATGAAAAATGTTAGCATGTAAGTATTGTTAATTTTGTTAAGTTCAGCACTATTTTACATTGAGTGGAAAGTTTTCAAAGTGCAAGTTTTTGAAAACGATACCATTATCGTTAGTATCGTATAATTTGTGAAAACGTTGTCGTCATGCACATGCATATTACGCAATGAGTCTATAGGCACGTAGTGTTTCTTTACAAAGTGTTTTAGTCATTTTCGTGGATCTGTGTGAACAGGGACTGTATGCAAAAAATGCAAAGGAAAAACTTTTCCATTTTTAGCATCGTTGTCCTGTAAAGGTTCGGAGTTCGGACTCAAGTTTGGAGGCCAAGAGGGCCGCATTTAAACCACATAAAATGCAAAGGGCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244325 True 1078 lncRNA 0.41 2 5066806 5089579

Neighbor

gene id symbol gene type direction distance location
CI01000050_05034897_05045722 GKAP1 coding upstream 20849 5034897 ~ 5045957 (+)
CI01000050_05027317_05033248 CUNH9ORF64, C5H9ORF64 coding upstream 33504 5027317 ~ 5033302 (+)
CI01000050_05014220_05023731 NA coding upstream 42634 5014220 ~ 5024172 (+)
CI01000050_04865991_04906702 AGTPBP1 coding upstream 159391 4865906 ~ 4907415 (+)
CI01000050_04759894_04762802 NA coding upstream 303705 4759823 ~ 4763101 (+)
CI01000050_05160439_05203170 NA coding downstream 70338 5159917 ~ 5203373 (+)
CI01000050_05220463_05237857 OPN7D coding downstream 130884 5220463 ~ 5238347 (+)
CI01000050_05300337_05306942 SYP, SYPB coding downstream 210758 5300337 ~ 5306942 (+)
CI01000050_05327777_05328382 PLP2 coding downstream 238198 5327777 ~ 5328399 (+)
CI01000050_05362253_05376134 PRICKLE3 coding downstream 272674 5362253 ~ 5377514 (+)
G215380 NA non-coding upstream 142970 4923602 ~ 4923836 (+)
G215332 NA non-coding upstream 213395 4810229 ~ 4853411 (+)
G215361 NA non-coding upstream 219597 4846402 ~ 4847209 (+)
G215319 NA non-coding upstream 287548 4770939 ~ 4779258 (+)
G215348 NA non-coding downstream 33126 5122705 ~ 5127959 (+)
G215478 NA non-coding downstream 189793 5279372 ~ 5312891 (+)
G215474 NA non-coding downstream 196060 5285639 ~ 5287362 (+)
G215499 NA non-coding downstream 300370 5389949 ~ 5390319 (+)
G215500 NA non-coding downstream 314346 5403925 ~ 5404270 (+)
CI01000050_04591548_04592778 NA other upstream 473757 4589926 ~ 4593049 (+)
G214717 NA other upstream 958526 4107582 ~ 4108280 (+)
CI01000050_03938328_03956122 RHOBTB2 other upstream 1109762 3931890 ~ 3957044 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other upstream 1258067 3805143 ~ 3808870 (+)
CI01000050_02852118_02864754 RNF122 other upstream 2200984 2852118 ~ 2865822 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 318006 5407585 ~ 5409417 (+)
G215539 NA other downstream 540031 5629610 ~ 5631203 (+)
G215773 NA other downstream 1571609 6661188 ~ 6665703 (+)

Expression


Co-expression Network